PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000251.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 315aa    MW: 35091 Da    PI: 6.5235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000251.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-19122171255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Itr_sc000251.1_g00008.1 122 KYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 171
                              8********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-30121179IPR001471AP2/ERF domain
PfamPF008476.3E-13122171IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-22122180IPR016177DNA-binding domain
SMARTSM003801.0E-37122185IPR001471AP2/ERF domain
PROSITE profilePS5103223.749122179IPR001471AP2/ERF domain
CDDcd000181.82E-30123178No hitNo description
PRINTSPR003671.0E-10123134IPR001471AP2/ERF domain
PRINTSPR003671.0E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MFPGPVKYKY SEHRRQTKMF GPAPAAGFSG KRKSSEVNGG LPRVVRISVT DDDATDSSGD  60
EGEPGASGGR RRVKKYVNEV TIERCGRDSY GNDGVLKRRK MAPAPEADNR LKKKKKVNNV  120
RKYRGVRQRP WGKWAAEIRD PLRRVRLWLG TYDTAEEAAM VYDNAAIQLR GPHALTNFSV  180
PSTPASLVDN HRKPESPSLS GYNSGEESHA SRHSPNSVFL FNSEADSEPI FAHPNDVVIS  240
ENFSSFSPFP DHWFENPVQE PGLFHEPGFP DEIFEESCYE MFIGSSLGLG SSTIPADDYF  300
QDFEDIFGSD PLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19121178462ATERF1
3gcc_A3e-19121178462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197115RRKMAPAPEADNRLKKKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1720272e-75GU172027.1 Ipomoea batatas microsatellite Stv_Ipb_1801 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160423.11e-177PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A1J6KL082e-99A0A1J6KL08_NICAT; Ethylene-responsive transcription factor crf2
STRINGXP_009763317.12e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-42cytokinin response factor 2