PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000249.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 171aa    MW: 19520.4 Da    PI: 4.8293
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000249.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.57.8e-5317112297
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              reqdr lPianv+rimkk+lPanak+skdaket+qecvsefi+fvt+eas+kc++e+rkt+ngdd++wa+a lGf+dy+ pl+ yl
  Itr_sc000249.1_g00020.1  17 REQDRWLPIANVGRIMKKTLPANAKVSKDAKETMQECVSEFIGFVTGEASEKCRKERRKTVNGDDICWAMAALGFDDYAPPLRRYL 102
                              89************************************************************************************ PP

                    NF-YB  88 kkyrelegek 97 
                              ++yr+ ege+
  Itr_sc000249.1_g00020.1 103 QRYRDQEGER 112
                              *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-5312149IPR009072Histone-fold
SuperFamilySSF471131.24E-3819130IPR009072Histone-fold
PfamPF008082.2E-272286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-165068No hitNo description
PRINTSPR006152.5E-166987No hitNo description
PRINTSPR006152.5E-1688106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAENSGPGGL NDDESFREQD RWLPIANVGR IMKKTLPANA KVSKDAKETM QECVSEFIGF  60
VTGEASEKCR KERRKTVNGD DICWAMAALG FDDYAPPLRR YLQRYRDQEG ERANQERVSN  120
EETENNINNQ FQEPSSSSYH RSHEDEAQQQ DFPSSSSSSF PMSFKSMSKP Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4416107192Transcription factor HapC (Eurofung)
4g92_B3e-4416107192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179783.19e-83PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO822484e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2K1ZLA21e-64A0A2K1ZLA2_POPTR; Uncharacterized protein
TrEMBLB9N5181e-64B9N518_POPTR; Uncharacterized protein
STRINGPOPTR_0008s22520.12e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]