PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000249.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 398aa    MW: 41532.9 Da    PI: 8.4513
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000249.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-091130827
                             GGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                             ++++tG Ck+G++Ck++H++
  Itr_sc000249.1_g00011.1 11 YYMKTGMCKFGASCKYHHPR 30
                             8*****************96 PP
2zf-CCCH39.87.7e-135075227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             ++++C+++++tG+Ck+G +CkF+H++
  Itr_sc000249.1_g00011.1 50 GEKECSYYMKTGQCKFGVTCKFHHPQ 75
                             7899********************97 PP
3zf-CCCH40.64.1e-13221247127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+++++tG CkyG++C+++H+p
  Itr_sc000249.1_g00011.1 221 PGEPECQYYMKTGDCKYGSSCRYHHPP 247
                              5799*********************97 PP
4zf-CCCH322.1e-10270293427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                              + C +++++G Ck+G++CkF H++
  Itr_sc000249.1_g00011.1 270 PVCLHYSQNGVCKFGPTCKFDHPM 293
                              78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.352331IPR000571Zinc finger, CCCH-type
SMARTSM003560.45630IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-61130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7094876IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-64875IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65076IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-105075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-45474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061220248IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-7220247IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10222247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6225247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5226247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892266294IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5266293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6268296IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-8270293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4271291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MISIQQFLVL YYMKTGMCKF GASCKYHHPR QGGGSTLVMM NIYGYPLRPG EKECSYYMKT  60
GQCKFGVTCK FHHPQPAGAE MPAPTAAPGP LPTAAAVAAP SIYPAVQSPS AQSSQQFGVM  120
AGNWSIARPA LLHGSYMPGA YSPMLFPPGV VPVPGGWTPY PAPVSPAASP STQSAAGAGQ  180
FYGLTPLSPS APPYSGVYMY AGSAPGPSRV SQREHAFPER PGEPECQYYM KTGDCKYGSS  240
CRYHHPPEWS ASKANFVLSP IGLPLRPDAP VCLHYSQNGV CKFGPTCKFD HPMGTLSYSP  300
SASSLADMPV APFPVGSSMG TLAPSSSSSD LRPNVTSGSN QEAFSTQISS MNTSSGAVGS  360
IFSVTGPAPH PGLQQSGQSY SASGSSSMGH GGEVHTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179744.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_019179746.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X3
SwissprotQ84W911e-123C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3Q7EGL41e-177A0A3Q7EGL4_SOLLC; Uncharacterized protein
STRINGSolyc01g067550.2.11e-178(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-96C3H family protein