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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Itr_sc000248.1_g00005.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family |
BBR-BPC |
Protein Properties |
Length: 283aa MW: 31136.4 Da PI: 9.7568 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Itr_sc000248.1_g00005.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 311 | 4.1e-95 | 1 | 283 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd...........maflqrdkalaern 71
mdddg + rn+gyyep+ k lglqlm s+ +rd+++ r +n +++++++ +++rd +++ rd ++++
Itr_sc000248.1_g00005.1 1 MDDDGLNMRNWGYYEPS--HKGPLGLQLMPSVVDRDTRTffsgR-ENPSMMASNGLFHPRDsvvsqasslthIDY-IRDGWINH-- 80
9*****99*******99..7899***************999955.55569***********88777766666666.66666666.. PP
GAGA_bind 72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak 157
++k+l++ + +p g +v+ + + ++s+ q le ++++ ee + + +++ + + ++k++ ++
Itr_sc000248.1_g00005.1 81 ------RDKFLHMFP-------GNPYGGGVMADPSGTQSSMQ----MLETDSTK---EE-----IANVEDPSVGKDSCPSKKRPGA 141
......789999999.......45777777777777664433....13333332...22.....2223345666667777777888 PP
GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
+ +kakk+kk +++ kk+ +++ +r+k kksi++v+ g+++D+s++P+PvC+CtG+++qCY+WG+GGWqSaCCtttiS+yP
Itr_sc000248.1_g00005.1 142 AASPPKAKKPKKGPSALKKNDNPPA--QRAKPAKKSIEVVISGIDMDISSIPTPVCTCTGTPQQCYRWGCGGWQSACCTTTISMYP 225
888999999***9999999999888..79********************************************************* PP
GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LP++ krrgaRiagrKmSqgafkk+LekLa+eGy++s p+DL+++WAkHGtnkfvtir
Itr_sc000248.1_g00005.1 226 LPMNNKRRGARIAGRKMSQGAFKKVLEKLASEGYNFSDPIDLRTYWAKHGTNKFVTIR 283
*********************************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDDDGLNMRN WGYYEPSHKG PLGLQLMPSV VDRDTRTFFS GRENPSMMAS NGLFHPRDSV 60 VSQASSLTHI DYIRDGWINH RDKFLHMFPG NPYGGGVMAD PSGTQSSMQM LETDSTKEEI 120 ANVEDPSVGK DSCPSKKRPG AAASPPKAKK PKKGPSALKK NDNPPAQRAK PAKKSIEVVI 180 SGIDMDISSI PTPVCTCTGT PQQCYRWGCG GWQSACCTTT ISMYPLPMNN KRRGARIAGR 240 KMSQGAFKKV LEKLASEGYN FSDPIDLRTY WAKHGTNKFV TIR
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |