PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000246.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 323aa    MW: 37720.7 Da    PI: 6.5418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000246.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.6e-128643391
                             -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                             s++++l++++ ++W++++  +k +++++++ GW +Fv++n   +gD + F++d+   f 
  Itr_sc000246.1_g00019.1  8 SRKVILRNRKQKVWNIEI--TKIGDACFFKYGWAKFVEDNSFIDGDQLFFMYDHPAVFD 64
                             679***************..*******************************99865554 PP
2B335.22.3e-112283121297
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvk 95 
                              +++ l++p + ++++++k   + +++l de++++W+ +++++  + r++l++GW++ +k n ++e+D ++ +++ +   e  l+v+
  Itr_sc000246.1_g00019.1 228 RRDDLYIPVELVRDYNIK--LPAKVILCDERNQKWDAYIKMWSDG-RTWLSGGWRKLCKWNLVQEKDRCICEFVPSlgPELVLKVT 310
                              5678***********888..8889***************988875.789********************99977432355555555 PP

                              EE CS
                       B3  96 vf 97 
                              ++
  Itr_sc000246.1_g00019.1 311 II 312
                              55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.885171IPR003340B3 DNA binding domain
CDDcd100171.53E-6358No hitNo description
Gene3DG3DSA:2.40.330.109.4E-11869IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-12869IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-9861IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-18214314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-19214314IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.082217315IPR003340B3 DNA binding domain
CDDcd100171.62E-10218313No hitNo description
SMARTSM010191.8E-9220315IPR003340B3 DNA binding domain
PfamPF023621.6E-9228312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEPERRYSRK VILRNRKQKV WNIEITKIGD ACFFKYGWAK FVEDNSFIDG DQLFFMYDHP  60
AVFDFFVTDP FGHEKIIMEG KEAQVEGSKD NTFLVEFEFN MVTQVKKEED EMDAEEENND  120
AGFQYHTRTQ GKRCISELER ATNVTEREAN SNKGNVGAGE NDARAKKMGV SEEENDASAI  180
KVGVSEEKKD ASVKRRDVPD HYGLKLFNSG RFTQPKNPYF VTKIRPKRRD DLYIPVELVR  240
DYNIKLPAKV ILCDERNQKW DAYIKMWSDG RTWLSGGWRK LCKWNLVQEK DRCICEFVPS  300
LGPELVLKVT IIRRKDLEEA QPN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166019.11e-179PREDICTED: putative B3 domain-containing protein At5g66980
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.16e-10B3 family protein