PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000246.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 478aa    MW: 53679.1 Da    PI: 5.0919
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000246.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-16134222197
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k +++s+v+   +l lp +f++ +  + + + t+ le  +g+++e k+i ++++    l++GW++F  a++L+egD vvF+l++
  Itr_sc000246.1_g00002.1 134 FIKFMSRSHVTHGFWLGLPADFCRMYL-P-PHDHTIPLEGDNGKQYETKFIAERQG----LSGGWRGFSLAHNLQEGDAVVFHLVQ 213
                              89*********************9994.3.35569***************655555....9***********************99 PP

                              SSEE..EEEEE CS
                       B3  87 rsefelvvkvf 97 
                              + +f  +v  +
  Itr_sc000246.1_g00002.1 214 QYKF--KVYTV 222
                              7666..55544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-22127225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-18128225IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-24132220No hitNo description
SMARTSM010194.2E-20134225IPR003340B3 DNA binding domain
PfamPF023624.2E-14134223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915134225IPR003340B3 DNA binding domain
PfamPF052666.8E-8350460IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MLCVCTRKTR IQVSAYNVMA GVGVAPTMAS QSVSMIEQNS KEALIKELKL KPEKNLEEEG  60
IDQLTLSQCF MKKASSSVSP SMGTPLIGEA SATNRKRARV MMKERYKKSA AYSYPTMQIA  120
MALQEGLDPT QPSFIKFMSR SHVTHGFWLG LPADFCRMYL PPHDHTIPLE GDNGKQYETK  180
FIAERQGLSG GWRGFSLAHN LQEGDAVVFH LVQQYKFKVY TVRANDSDHM HEGQLETAAK  240
DVNGCLNMNT LVEQTPYLEE NCQNDGQPET DYEVGDGGFI FENDKEDSPA EVKDVSSTKS  300
FVDLTNFSIV VNGCPMDAKF SISARLKYYE LCCAQKSYLH DGFPENINYT LAVGIILETV  360
SIADNIKACT LSTPLADLKS WENTLSGFIH LGMNVDFLQD RLKKLSSLAI EFQGCHEAIR  420
HSEIITEESE LNKEIESAEK KLMELKEAMV DVQVEKEALE TQFLICNLDF REMAKRPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166152.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A484L7011e-126A0A484L701_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-32B3 family protein