PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000246.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 188aa MW: 21697.1 Da PI: 9.2316

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000246.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.4	1.3e-18	73	162	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k l+ps+v s +l +pk f++ + + ++ t++l de+g++++ ++ ++++ l++GW+ F a++L gD+++F+l++ Itr_sc000246.1_g00001.1 73 FIKCLLPSNVAHSFWLHIPKAFCDLYL-P-SQNSTIMLVDEWGNEYKTTYLLERHG----LSAGWRAFSIAHRLLKGDILIFRLIE 152 89*******************8884.3.34559***********777776....**********************98 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 ++f +v+++r Itr_sc000246.1_g00001.1 153 PNKF--KVHIIR 162 7888..898887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-22	65	164	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-24	66	164	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.96E-25	71	162	No hit	No description
PROSITE profile	PS50863	12.605	73	164	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.9E-15	73	163	IPR003340	B3 DNA binding domain
SMART	SM01019	4.6E-20	73	164	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MTIESKKKLV CKKPESVKSK AKQVKSDNPR ISESSKRKRE TCNVTFDDVE AKFSVWERAE 60 RVLSSLEDEY PFFIKCLLPS NVAHSFWLHI PKAFCDLYLP SQNSTIMLVD EWGNEYKTTY 120 LLERHGLSAG WRAFSIAHRL LKGDILIFRL IEPNKFKVHI IRVNSRDVVE AAICLMNLND 180 HEKASNPG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165219.1	4e-93	PREDICTED: B3 domain-containing protein At5g42700-like
TrEMBL	A0A1S4DHZ8	2e-88	A0A1S4DHZ8_TOBAC; B3 domain-containing protein At5g42700-like isoform X3
TrEMBL	A0A1S4DI27	2e-88	A0A1S4DI27_TOBAC; B3 domain-containing protein At5g42700-like isoform X1
TrEMBL	A0A328CZE4	7e-89	A0A328CZE4_9ASTE; Uncharacterized protein
STRING	XP_009772548.1	4e-89	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-33	B3 family protein