PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000242.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 566aa MW: 61613.1 Da PI: 6.5157

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000242.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.1	1.9e-13	342	388	9	55
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +NRe+ArrsR+RK+ + Le+ v eL+ eN++L k+l e +++ Itr_sc000242.1_g00010.1 342 LMLSNRESARRSRRRKQVHLTDLETQVSELKVENSSLLKRLTEVSQK 388 589**********************************9888776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-11	335	398	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-10	342	387	No hit	No description
Pfam	PF00170	1.3E-10	342	387	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.8E-10	343	387	No hit	No description
PROSITE profile	PS50217	9.415	346	388	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	3.0E-33	435	547	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MDKVLTVGEN VDKFMPAPAP ADKMMMSRSP SEYAFQRFLQ EATASVDHTL SSSPPASCSS 60 TSAAAAASGR QRLPQNDVVE VSDRNLGADR DVKFGHESSG AESAAETAKT TSFGAGPAAN 120 APIGSEDYQT FLKSRLYLAC AAVAFSRGNC MDPQDSAAML PDKGLEASIS NPGSVVPPKG 180 SGNDFPKGDA GGPVGTSTLP AVQKKSSARA QSASGSEPSD DDEAEEEAET THQIDVKRAR 240 SSLIKDDKLS SVIDQLHELP SVNMHLSHCS ELRSLQWAFA ASLEQWPLLQ RLKEDSIFPS 300 QIDYKYQLYL DAANSRKKRI CCYALQYEMF KSVYLRLISK LLMLSNRESA RRSRRRKQVH 360 LTDLETQVSE LKVENSSLLK RLTEVSQKHN DAAVDNRILK ADVETLRAKL PRWHQGTSGL 420 LSPSTTLLNI VFLQVKMAEE TVKRITGMHS LFQTMPEIPT LSIPSFADSP SDTSADATVP 480 LQDDADNHYY QSLCRDSSIQ NGLLDIPPVD NARQDSAATA GVNNMGGLAS MHRVASLENL 540 QNRIRREAGG SCRTQCRLSN DVQKGT

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MDKVLTVGEN VDKFMPAPAP ADKMMMSRSP SEYAFQRFLQ EATASVDHTL SSSPPASCSS  60
TSAAAAASGR QRLPQNDVVE VSDRNLGADR DVKFGHESSG AESAAETAKT TSFGAGPAAN  120
APIGSEDYQT FLKSRLYLAC AAVAFSRGNC MDPQDSAAML PDKGLEASIS NPGSVVPPKG  180
SGNDFPKGDA GGPVGTSTLP AVQKKSSARA QSASGSEPSD DDEAEEEAET THQIDVKRAR  240
SSLIKDDKLS SVIDQLHELP SVNMHLSHCS ELRSLQWAFA ASLEQWPLLQ RLKEDSIFPS  300
QIDYKYQLYL DAANSRKKRI CCYALQYEMF KSVYLRLISK LLMLSNRESA RRSRRRKQVH  360
LTDLETQVSE LKVENSSLLK RLTEVSQKHN DAAVDNRILK ADVETLRAKL PRWHQGTSGL  420
LSPSTTLLNI VFLQVKMAEE TVKRITGMHS LFQTMPEIPT LSIPSFADSP SDTSADATVP  480
LQDDADNHYY QSLCRDSSIQ NGLLDIPPVD NARQDSAATA GVNNMGGLAS MHRVASLENL  540
QNRIRREAGG SCRTQCRLSN DVQKGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	350	357	RRSRRRKQ
2	352	357	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157195.1	1e-138	PREDICTED: light-inducible protein CPRF2-like isoform X1
Swissprot	Q99090	3e-53	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A484KQS7	4e-62	A0A484KQS7_9ASTE; Uncharacterized protein
STRING	XP_009787496.1	1e-62	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2934	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	3e-30	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]