PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000241.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 196aa MW: 21976.2 Da PI: 7.5277

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000241.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.1	7.2e-44	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q Itr_sc000241.1_g00013.1 11 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQ 96 7*********************************************************************************** PP DUF260 87 leqlkaelallke 99 + +l++el+++++ Itr_sc000241.1_g00013.1 97 VLRLQKELDATNA 109 ******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.314	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MSSSSSYSNP PCAACKFLRR KCLPGCVFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEIQ 60 PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVLRL QKELDATNAD LMRYARNEMS 120 SCGGGHGYHH PTTPDDHNNM NNYHQMYNQQ RSNNNNQYGR SSRVGSGGVF YGQSYEMPNY 180 SSQWTNSSSG EHNPDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-67	11	119	11	119	LOB family transfactor Ramosa2.1
5ly0_B	3e-67	11	119	11	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019161359.1	1e-109	PREDICTED: LOB domain-containing protein 25
Refseq	XP_019161360.1	1e-109	PREDICTED: LOB domain-containing protein 25
Refseq	XP_019161361.1	1e-109	PREDICTED: LOB domain-containing protein 25
Swissprot	Q8L8Q3	5e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S4CXF4	1e-86	A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like
STRING	XP_009597524.1	2e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	6e-68	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]