PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000239.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 329aa MW: 36955.1 Da PI: 6.3859

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000239.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.7	4.8e-16	27	118	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W+++ + +L++a ++ +l+rg+l+ ++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +k+ + + st+p+ Itr_sc000239.1_g00012.1 27 CWSEEATSTLVDAWGRRYLELNRGNLRHKDWQEVADAVnslhgHTKKGHRTDVQCKNRIDTLKKKYKTEKAKIAESNGALASTWPF 112 7************************************999988899*******************99999888888 PP trihelix 82 fdqlea 87 f++l+a Itr_sc000239.1_g00012.1 113 FTRLDA 118 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.2E-26	25	119	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGEMMDSFAG PQSAAPASRP LPFREDCWSE EATSTLVDAW GRRYLELNRG NLRHKDWQEV 60 ADAVNSLHGH TKKGHRTDVQ CKNRIDTLKK KYKTEKAKIA ESNGALASTW PFFTRLDALI 120 GNSGKNQFPK SSAAVVTPSP SLSPSPLPLP SYSPLSLPSP PMGVPLPFRR PPPAAQPVIL 180 PQKRPPPPMD DSYFKKNYSA MAAAAAATDD DADEEEEEDG IRGESEEEME TSDEITEEEG 240 IRRLAKAIKR FGEIYERVEG MKQRQMIELE KQRMQFAKDL EVQRMQLYMD TQVQLEKIKQ 300 SKRSGSDVIL GAYCIICLYL VKFLSLPLH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175979.1	1e-161	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A328DGT0	1e-138	A0A328DGT0_9ASTE; Uncharacterized protein
TrEMBL	A0A484K7R3	1e-138	A0A484K7R3_9ASTE; Uncharacterized protein
STRING	XP_009757835.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	4e-36	sequence-specific DNA binding transcription factors