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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000236.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 25513.5 Da PI: 6.0582 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 62 | 115 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F +r++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Itr_sc000236.1_g00010.1 62 KRKLSEEQVNLLEQSFGDERKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.5 | 3.7e-38 | 61 | 151 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kr+ls+eqv+lLE+sF e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + en+rLe++v +L Itr_sc000236.1_g00010.1 61 RKRKLSEEQVNLLEQSFGDERKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKAEHESTVLENCRLETQVLKL 146 8************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 +e+l Itr_sc000236.1_g00010.1 147 KEQLC 151 *9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.5E-19 | 59 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.31E-17 | 61 | 117 | No hit | No description |
SuperFamily | SSF46689 | 2.72E-18 | 61 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.941 | 61 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 63 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.6E-17 | 63 | 115 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.5E-5 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-5 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAGCGGINNN QVDDQMALIS QFYPDIYTQL LSDQGEAAEA KPRRRRKKNK AGGDGGLTGI 60 RKRKLSEEQV NLLEQSFGDE RKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKKLEE 120 EYSKLKAEHE STVLENCRLE TQVLKLKEQL CDAENRVQML LDRRHHGGGG GGDGVSSNSP 180 STSSFPTEAP PFFGEFGMDG LDDVFYVDEN HYGHVVDQWI KFYGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 63 | RKKNKAGGDGGLTGIRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019182421.1 | 1e-133 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 7e-68 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A3Q7F7L4 | 4e-86 | A0A3Q7F7L4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g085630.2.1 | 6e-87 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 6e-59 | homeobox protein 40 |
Publications ? help Back to Top | |||
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