 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000232.1_g00016.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 338aa MW: 36938.1 Da PI: 6.4415 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000232.1_g00016.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.3 | 1.3e-18 | 161 | 215 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Itr_sc000232.1_g00016.1 161 RKKLRLSKEQSAYLEESFKEHHTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTK 215
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 127.2 | 7.2e-41 | 161 | 251 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk+rlskeq++ LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +e
Itr_sc000232.1_g00016.1 161 RKKLRLSKEQSAYLEESFKEHHTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLREENRRLHKELQE 246
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelk 92
Lr +lk
Itr_sc000232.1_g00016.1 247 LR-ALK 251
*9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MELGLSLGLG FTAAVNERLG RQEDGQEPEK SHRSNDSDED DDVDVEDYDH ATSSEEEPHQ 60
SADQRLAIFV PPVPLDLLPP APVQNKNVAA ARAAPFPAAE EVSSPNSVAS SFRAIDFSIF 120
KRNRNGAAVD DGRASDAAAN GGASEPASRA SDEDENGVNA RKKLRLSKEQ SAYLEESFKE 180
HHTLNPKQKH ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLREENRRL 240
HKELQELRAL KSSNPFYMHL PATTLTMCPS CEKVASTSNA PPPQAAAAAT VSAPAPTTPT 300
TAAPVDSIPK PIPFLAKPRF FPFTAAHNPG HPHQSAAS
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 209 | 217 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
