 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000228.1_g00019.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
bHLH |
| Protein Properties |
Length: 287aa MW: 32375 Da PI: 7.814 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000228.1_g00019.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 32.8 | 1.2e-10 | 122 | 165 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+ ++++ Lr+++P + K++ +i+ A++YIk+L
Itr_sc000228.1_g00019.1 122 LMAERRRRKRLHDRLSMLRSIVPRiS------KMDRTSIVADAIDYIKDL 165
589*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MEVSRHGLLE ELIASPLNTN EFFPNGWISS SFESSLASYQ NHPPPDFLLS SNSSLEDDDS 60
TTFACPLADI FKKPRTPPPP PPFPVEQVHG GGREARQLLV TGFEAAKKKK KKVEEGQPSK 120
NLMAERRRRK RLHDRLSMLR SIVPRISKMD RTSIVADAID YIKDLLHKIN QLRQVRENPT 180
GLFKPPPDEL TNPTSSPKFE VERRQEDTRI EICCATRPGL MLSTVSTLEA IGLDIQHCVI 240
SCFTTDFSFQ ASCTEAMEHP TVVHRPEDIK QVLFKTAGYG GRCLYEK
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 109 | 130 | KKKVEEGQPSKNLMAERRRRKR |
| 2 | 124 | 131 | ERRRRKRL |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
|
