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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000227.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 521aa MW: 58768 Da PI: 6.2376 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.2 | 4.8e-21 | 163 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k l++s+v++ ++ lp +f++++ + +++t+++e+esg+++e+k+i +k++ l++GW++Fv a++L egD+++F+l+g Itr_sc000227.1_g00005.1 163 FLKLLVRSHVGSCFWMGLPVPFCKKYLSR--KDTTVVVENESGEEFEIKYIAEKTG----LSAGWRKFVAAHKLVEGDVLIFQLTG 242 89************************655..6779***************777777....************************99 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++f +v v+r+ Itr_sc000227.1_g00005.1 243 PDRF--KVYVIRT 253 8888..8888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.1E-21 | 155 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-22 | 158 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.22E-25 | 161 | 252 | No hit | No description |
PROSITE profile | PS50863 | 14.057 | 163 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-18 | 163 | 252 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-22 | 163 | 254 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MKIKVVLNQE NRGDPEMPKK EIVEDEGAKR EWPEPEEDET REPNEENLSL VNIPNSSASP 60 LNSYPQNLGK RKRKPKEMID EISPLVLSRK RKKKLQPSAA QSSHGKLNLY RSSPCDPSWQ 120 RTDVNQEGPG GMGKSPSTLQ VKSPTLIRAE EVQSSLGQEY PTFLKLLVRS HVGSCFWMGL 180 PVPFCKKYLS RKDTTVVVEN ESGEEFEIKY IAEKTGLSAG WRKFVAAHKL VEGDVLIFQL 240 TGPDRFKVYV IRTNDLTDVD GALSLLNLEV LTKQSDAAAE ATNPNNKRKK RQKSLPLTVV 300 QKKKHKAQQL VQLEEQSGND SDEVASEVFE GSKSLSLAVS FGDIKSFEDF TIVVNGVCLD 360 SEIPEHIRRK YYELCCSKNA FLHDRLLTGL YGQLIAGMIF EVVSIADALR ACKLTTARTE 420 FEVWDKSLKS FELLGMNVGF LRDRVRHLLD LAFESEGASD AKRYWEAKTG MARTEEEIKT 480 IEIKLVELKE ASKVYSADVE ALRSKAESFE IMFDEEINAP W |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 93 | KRKPKEMIDEISPLVLSRKRKKK |
2 | 88 | 92 | RKRKK |
3 | 286 | 303 | KRKKRQKSLPLTVVQKKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185515.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
TrEMBL | M1BAE9 | 0.0 | M1BAE9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040786 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7204 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-36 | B3 family protein |