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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000215.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 735aa MW: 77152.8 Da PI: 7.6179 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.2e-08 | 253 | 297 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I + Rt+ q+ rw Itr_sc000215.1_g00014.1 253 RKPWSEAEDLELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 297 789************************984222488888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.164 | 248 | 305 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-13 | 248 | 300 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.6E-12 | 249 | 303 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-9 | 252 | 303 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-7 | 253 | 297 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.14E-13 | 254 | 302 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MVEKSGKRKK CSVSEEDIST LLQRYNATTV LALLREVAQV TEVKIDWNEL VKKTSTGITN 60 VREYQMLWRH LAYRHGLADR LDDTALPLKA YLESVDKIFA LVSLLLLHPI TILTLSGSAI 120 HPLGCCISSP TVLFFDKSDD DSDLEYELEA SPAVSSEASA EAAACVKVFI ASGVPNDSYL 180 SNGTIVEAPL TINIPTGQTC RNPSDNCYQS ISHGTNITVP VFVQKQPLPN VTSAEGLDNN 240 GASNATLPPR RKRKPWSEAE DLELIAAVQK CGEGNWANIL KGDFKGDRTA SQLSQRWAII 300 RKRQGTLVGN SSQPTEAQLA ARRAMSLALD MPMGDNLKAV CSINTGANTN ISPGNPANPP 360 AAETSFAGTQ SQNHLGQQQD SAMAAQKPGT LGPSKARVPP KKPPTKSTLS PDSMVKAAAV 420 AAGARIATPS DAASLLKAAQ SMNAVRIMPG GGGPMVKPPA VGANTLPSNV HFIRTGLLSH 480 SKTLPNATRT GPQPVQGHSA KPASQVVQSN LASTTIPGPK ASNEVPNGTN STLAAELDVK 540 TVEDAVISGP KALAEVPNGT NSTSVSKVPN GTNSTPASEL DTKTAKDSVI SGSGGLGTVM 600 EKPAKESRAP GPCNSPEGNK AVPTKEAPLE LAQMDQTAIP AKEKIEETCF SGDAPKENGQ 660 RDQASVSTAR AATICVQEKQ INSSSTTNVT TAKCSANDRN QAEVECASSN DNSAIVSPVG 720 NTGKEMNEKQ PTNRE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 254 | PRRKRKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019175330.1 | 0.0 | PREDICTED: uncharacterized protein LOC109170597 isoform X3 | ||||
TrEMBL | A0A484LDP8 | 0.0 | A0A484LDP8_9ASTE; Uncharacterized protein | ||||
STRING | XP_009597578.1 | 1e-174 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3434 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 4e-42 | MYB_related family protein |