PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000214.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 478aa MW: 52780.4 Da PI: 6.8797

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000214.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.2	2.8e-11	86	109	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWtp+LH +Fv+ave LGG++ Itr_sc000214.1_g00008.1 86 PRLRWTPDLHLCFVHAVETLGGQD 109 8*********************98 PP
2	G2-like	48.9	1.4e-15	151	184	22	55
G2-like 22 GGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 G + AtPk +l+lm++kgL+++hvkSHLQ+YR+ Itr_sc000214.1_g00008.1 151 GKESGATPKLVLQLMNIKGLSIAHVKSHLQMYRS 184 33456****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-27	82	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-10	148	186	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.68E-5	149	185	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-27	156	185	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MKGGISCSPE DFSNKSPETQ IEEDLKDEEQ EDDEYEEEEE GEEEGISEKG KGNNGSSSSN 60 STVEENGKKA GNSSGSVRQY VRSKTPRLRW TPDLHLCFVH AVETLGGQDS MCSQLSSPFF 120 SFLHLLFSIP PFLATTRGYA LNKFRLVTLA GKESGATPKL VLQLMNIKGL SIAHVKSHLQ 180 MYRSKKMDDL NQAVTSSNGR LLLDNGDHHH FFNFGHLQRL QGFNQTTNPT VRFQDALRSH 240 QANAIYNPYI NGGASSMIRH GGLHGIFGGN IYGSHNNNNN VNSNHSHHNN PLSSDYFRTA 300 AAISRQSPAC KNMENENKLH QPHFFPAQRI LASHQFGIGS SPANQILLKK LQLERGRDPP 360 PAPAPPPQTR NILEESVGVS RPDGAAAEGT HTLKRKSLPD SSCDRHQVNL DLSLSLRTRN 420 ENDQKRLKLD EEDAGEYDVG GVDTTDLSLS LFSSSSEKHH GTTKQPTRIE NSGLHLSL

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MKGGISCSPE DFSNKSPETQ IEEDLKDEEQ EDDEYEEEEE GEEEGISEKG KGNNGSSSSN  60
STVEENGKKA GNSSGSVRQY VRSKTPRLRW TPDLHLCFVH AVETLGGQDS MCSQLSSPFF  120
SFLHLLFSIP PFLATTRGYA LNKFRLVTLA GKESGATPKL VLQLMNIKGL SIAHVKSHLQ  180
MYRSKKMDDL NQAVTSSNGR LLLDNGDHHH FFNFGHLQRL QGFNQTTNPT VRFQDALRSH  240
QANAIYNPYI NGGASSMIRH GGLHGIFGGN IYGSHNNNNN VNSNHSHHNN PLSSDYFRTA  300
AAISRQSPAC KNMENENKLH QPHFFPAQRI LASHQFGIGS SPANQILLKK LQLERGRDPP  360
PAPAPPPQTR NILEESVGVS RPDGAAAEGT HTLKRKSLPD SSCDRHQVNL DLSLSLRTRN  420
ENDQKRLKLD EEDAGEYDVG GVDTTDLSLS LFSSSSEKHH GTTKQPTRIE NSGLHLSL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU171616	3e-84	GU171616.1 Ipomoea batatas microsatellite Stv_Ipb_318 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019150906.1	0.0	PREDICTED: uncharacterized protein LOC109147717 isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-27	G2-like family protein