PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000214.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 180aa MW: 20003.4 Da PI: 8.2051

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000214.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7e-42	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++slvyeAe+r+rdPvyG++g i +lq++ Itr_sc000214.1_g00007.1 12 SCAACKFLKRRCVPNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVPEEQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRR 97 6*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 +++l+++l+l++++ Itr_sc000214.1_g00007.1 98 MAELQNDLVLARAR 111 ******999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.756	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-41	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MKNHQEPRSS SSCAACKFLK RRCVPNCQFA PYFRSDEPKK FAKVHKVFGA SNVSKILNEV 60 PEEQREDTVN SLVYEAEVRL RDPVYGCIGA IASLQRRMAE LQNDLVLARA RLAFYATANP 120 PTAPASSSSS SSFFNYDPNL PSSYLDFQPS GGFSGAYDHQ NSLILDHPGS LNQFGQFPFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-46	7	116	6	115	LOB family transfactor Ramosa2.1
5ly0_B	8e-46	7	116	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019151098.1	1e-112	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	5e-60	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1S4C1U5	2e-85	A0A1S4C1U5_TOBAC; LOB domain-containing protein 21-like
STRING	XP_009630762.1	3e-86	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-60	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]