PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000211.1_g00015.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YA

Protein Properties

Length: 2621aa MW: 296068 Da PI: 8.2971

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000211.1_g00015.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	91.9	8e-29	2463	2519	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR Rak+e ekk +k+r+pylheSRh+hAlrR+RgsgGrF Itr_sc000211.1_g00015.1 2463 EEPVYVNAKQYNGILRRRRVRAKAELEKKA-IKARRPYLHESRHQHALRRARGSGGRF 2519 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF09725	3.8E-42	119	243	IPR019129	Folate-sensitive fragile site protein Fra10Ac1
Pfam	PF14111	1.0E-36	432	574	IPR025558	Domain of unknown function DUF4283
PROSITE profile	PS50158	9.142	604	619	IPR001878	Zinc finger, CCHC-type
SuperFamily	SSF56219	3.27E-25	865	1089	IPR005135	Endonuclease/exonuclease/phosphatase
Pfam	PF03372	1.6E-10	865	1083	IPR005135	Endonuclease/exonuclease/phosphatase
Gene3D	G3DSA:3.60.10.10	4.2E-16	865	1090	IPR005135	Endonuclease/exonuclease/phosphatase
SuperFamily	SSF56672	1.71E-20	1278	1584	No hit	No description
PROSITE profile	PS50878	14.062	1335	1616	IPR000477	Reverse transcriptase domain
CDD	cd01650	1.04E-54	1348	1615	No hit	No description
Pfam	PF00078	2.1E-42	1354	1615	IPR000477	Reverse transcriptase domain
Pfam	PF13966	6.9E-16	1874	1960	IPR026960	Reverse transcriptase zinc-binding domain
PROSITE profile	PS50879	10.102	2066	2196	IPR002156	Ribonuclease H domain
SuperFamily	SSF53098	4.55E-19	2068	2197	IPR012337	Ribonuclease H-like domain
CDD	cd06222	5.59E-34	2072	2192	No hit	No description
Gene3D	G3DSA:3.30.420.10	1.4E-8	2073	2197	IPR012337	Ribonuclease H-like domain
Pfam	PF13456	1.8E-26	2073	2194	No hit	No description
SMART	SM00521	8.6E-35	2461	2522	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.545	2462	2522	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.0E-24	2464	2519	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.2E-21	2465	2487	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	2467	2487	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.2E-21	2496	2519	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2621 aa Download sequence Send to blast
MTSFRSIRQA IYDREARKQQ YQAHIQGLNA YDRHKKFLSD YDDFVVMFLY GSDEYWSLSN 60 LFFGASLDAK DACKWLYLFC PGVLQHLVKY TYSFKYNDWT EVAYYGKDRS KQEVLPVKTD 120 QDTLREGYRF IRTEEDDMNP SWEQRLVKRY YDKLFKEHEM PYYAFDYPSD MTHYKSGKIG 180 LRWRTEKEVI SGKGQFICGN KHCNKKDGLA SYEVNFSYVE AGENKQALVK LVTCERCAEK 240 LLYKKRKEEQ LKEKQRRKRE RSESDNQEDE HDRRRERKKG SKASTSAEDH NKTDEDDENF 300 DDTRKRKVSG DNSGNTTVVQ EEATPSEQHS PSEVVAETPL TEHPGSAMQI ENDGVVPADL 360 GAEQTPPAPA AGAQPRSYLD SVVGSGAGAA PFLLASLSDE EDADDQMGDD DIGLEDSDPT 420 CPRIRFTAKE IDQIRAPWRQ SLIIKVMGRR VGYAYLLRRL NSMWHPKGRM ELIALENDYF 480 LVRFGLVEDL EFAKFEGPWM ILDHYLIVKD WIPNFDPFED TTEKVLVWVR FPNIPMEYYN 540 LLCLRRIGNK LGRTVRVDHT TSLVSRGKFA RVCVEIDITK PLLSTFTLDE KVWKVAYEGI 600 HLVCFSCGLY GHRQDSCPNK VADQTAVESE NGQETADPSS SSSRSAAPAV NTTAGTNIAQ 660 RPKPYGSWML VTRKERRQPV QTSGPANRIP GSGAGSDRGA LGSRYAPLET VDGTETAADN 720 VTQHQPRRRA DKQPVVSGSA GVRHQAAPRR ANVIVNERQI VNDRAEGRSG TQVATEQVTR 780 RHMAGGSGSR RAAEEDEHVV VRGENGGQVV NSTRVANGES PELTPIDSTQ TSPEHHADPP 840 DALDVEGDVV MEIENQAGDN QMEVWNCQGA GGRAFHRVLK HLIHTNKPTF LSLVEPKISG 900 AQADSFCRKL GFSDWVRVEA VGFSGGIWTF WNNSLHVTVI ATHPQFILLQ ITSAHHNPWF 960 YAVVYGSPTH HLRRRLWAEL TITKHNLYGP LLIAGDFNAV LTREDTDNYT TFSSQRSSEF 1020 AEWVQSEGLV DLGYTGPKFT WVKSLSSGVT KSARLDRAFC NVEWRQRFPE AAVSHLPRVA 1080 SDHAPILIQM VARSSIARQF PFRFQAAWFT HDGLYDTVNT NWDTSTDFCS NIARMGFTLA 1140 GWNKSVFGNI HHKKKAVLAR LSGVQRRLTF SPHGGLFKLE RRLMEDYHDI LYQEKLLWFQ 1200 RSREEWIASG DRNTAYYHAA TAVRKARNTV ITLRGEDGVW ITDSEALKSY VRDFYVELFS 1260 NESRSLPQAV LGGVFPCLPQ ADWDSFNRVV TKDEVHDALM AMAPFKAPGP DGFHAAFFQR 1320 LWGTVGDSLY QLVRQAFMNG TFPREINDTL LVLIPKIQSP ETVKQFRPIS LCNVSYKLIT 1380 KTITNRLKSI LPTLIGPFQS SFVPGRQISD NVIIFQEVVH SMRAKRGQCG YMAIKLDFEK 1440 AYDRLSWSFI ESTLLEAGFD QNWITLIMYC IRTPSMSINW NGERLQKFRP ERGIRQGDAM 1500 SPAIFVLCLE KLSQLISMKV GTGEWKGLRL APSCPILSHL CFADDTVLFT EASLEQADIV 1560 KDCLLKFCDA SGQRISFAKS QVFFSKNVPP DLSSAISNRL QIEQTNDMGK YLGVKSIHGR 1620 VTYHHFTELL DRVNGRLEGW KTKTLSVAGR VTLAKAVLNA IPTYTMQTAV LPTGVCLEIE 1680 KRIRKFIWGH SGPDSQSKLN LVRWDVVTTP IHAGGLGLYR LQNLNQAYMS KLRYRLYTER 1740 DQIWARTLWS KYTNPRRSQL SKNISNAWKG IMSARSITEK GLVQQVRNGK ATQFWMDKWL 1800 KPFPLRFVLT KPLSLPELYA TVEEYWEEGR GWKWDRLAGI IPDDIIESLA GFVLSGDDTL 1860 EDVVGWGLDN SGAFSLSSAY EVATNIMPQS GSTIWTKIWG LHVPHRICFF VWLVMHEKIL 1920 TNVERGRRHL TTNIDCIFCA GRHEDCNHLF RQCKEIQGLW EAGLGTQVVR RLQHLDWTNW 1980 LKVQISGDRS MGIPTTWPER FVTRLWWIWK WRNAMVFQQT RLPLSYKLAW LTKQDEEITS 2040 SFSRHAARGM PKVITVAGAD HWSKPTGGWF KLNVDGSVIT TSGVAGCGGV LRDDTGRWIE 2100 GFTYRIGRCS VADAEAWGVL QGLRMAAHNG IPNLIVESDS KVIIDQLRGA NLRLGQHNNL 2160 IGHCISAAQP FGAIRFTHVL RDQNRLADAL AKKALTYENG LIIWSEAPTE LESLVLQDSL 2220 AGGVLXXXXX XXXXXXXXXX XXXXXXXXXX XRIVWLEECF KLLCSFFGVS PPFFDQKKKC 2280 ARTLCPITCT VNFVIRLFVI SESRFVAPAI VKHESHPLET GLPSISQSTV YMQPWWRGFG 2340 DNGMPTFGQE TNGSISFETN DSQGNAEGGN KEKETNSTAQ SGSNESNSQD EQHLKHASSI 2400 PAVMSEQLGA NSQMELVGHS IMLASYPYAD PQYGGMISYC SPVQSHLFGV HHARMPLPLE 2460 MEEEPVYVNA KQYNGILRRR RVRAKAELEK KAIKARRPYL HESRHQHALR RARGSGGRFL 2520 NTKTLNDMNS KTDEHTQSGA TATTNSGHSS GSEHLSTNSE GQSAVKEMRR AHASSNGDSH 2580 GFPSVHFTES TGNEKGSFLR HGHQDWSSMG NQAPHGAPPS N

Sequence ? help Back to Top

Protein Sequence Length: 2621 aa Download sequence Send to blast

MTSFRSIRQA IYDREARKQQ YQAHIQGLNA YDRHKKFLSD YDDFVVMFLY GSDEYWSLSN  60
LFFGASLDAK DACKWLYLFC PGVLQHLVKY TYSFKYNDWT EVAYYGKDRS KQEVLPVKTD  120
QDTLREGYRF IRTEEDDMNP SWEQRLVKRY YDKLFKEHEM PYYAFDYPSD MTHYKSGKIG  180
LRWRTEKEVI SGKGQFICGN KHCNKKDGLA SYEVNFSYVE AGENKQALVK LVTCERCAEK  240
LLYKKRKEEQ LKEKQRRKRE RSESDNQEDE HDRRRERKKG SKASTSAEDH NKTDEDDENF  300
DDTRKRKVSG DNSGNTTVVQ EEATPSEQHS PSEVVAETPL TEHPGSAMQI ENDGVVPADL  360
GAEQTPPAPA AGAQPRSYLD SVVGSGAGAA PFLLASLSDE EDADDQMGDD DIGLEDSDPT  420
CPRIRFTAKE IDQIRAPWRQ SLIIKVMGRR VGYAYLLRRL NSMWHPKGRM ELIALENDYF  480
LVRFGLVEDL EFAKFEGPWM ILDHYLIVKD WIPNFDPFED TTEKVLVWVR FPNIPMEYYN  540
LLCLRRIGNK LGRTVRVDHT TSLVSRGKFA RVCVEIDITK PLLSTFTLDE KVWKVAYEGI  600
HLVCFSCGLY GHRQDSCPNK VADQTAVESE NGQETADPSS SSSRSAAPAV NTTAGTNIAQ  660
RPKPYGSWML VTRKERRQPV QTSGPANRIP GSGAGSDRGA LGSRYAPLET VDGTETAADN  720
VTQHQPRRRA DKQPVVSGSA GVRHQAAPRR ANVIVNERQI VNDRAEGRSG TQVATEQVTR  780
RHMAGGSGSR RAAEEDEHVV VRGENGGQVV NSTRVANGES PELTPIDSTQ TSPEHHADPP  840
DALDVEGDVV MEIENQAGDN QMEVWNCQGA GGRAFHRVLK HLIHTNKPTF LSLVEPKISG  900
AQADSFCRKL GFSDWVRVEA VGFSGGIWTF WNNSLHVTVI ATHPQFILLQ ITSAHHNPWF  960
YAVVYGSPTH HLRRRLWAEL TITKHNLYGP LLIAGDFNAV LTREDTDNYT TFSSQRSSEF  1020
AEWVQSEGLV DLGYTGPKFT WVKSLSSGVT KSARLDRAFC NVEWRQRFPE AAVSHLPRVA  1080
SDHAPILIQM VARSSIARQF PFRFQAAWFT HDGLYDTVNT NWDTSTDFCS NIARMGFTLA  1140
GWNKSVFGNI HHKKKAVLAR LSGVQRRLTF SPHGGLFKLE RRLMEDYHDI LYQEKLLWFQ  1200
RSREEWIASG DRNTAYYHAA TAVRKARNTV ITLRGEDGVW ITDSEALKSY VRDFYVELFS  1260
NESRSLPQAV LGGVFPCLPQ ADWDSFNRVV TKDEVHDALM AMAPFKAPGP DGFHAAFFQR  1320
LWGTVGDSLY QLVRQAFMNG TFPREINDTL LVLIPKIQSP ETVKQFRPIS LCNVSYKLIT  1380
KTITNRLKSI LPTLIGPFQS SFVPGRQISD NVIIFQEVVH SMRAKRGQCG YMAIKLDFEK  1440
AYDRLSWSFI ESTLLEAGFD QNWITLIMYC IRTPSMSINW NGERLQKFRP ERGIRQGDAM  1500
SPAIFVLCLE KLSQLISMKV GTGEWKGLRL APSCPILSHL CFADDTVLFT EASLEQADIV  1560
KDCLLKFCDA SGQRISFAKS QVFFSKNVPP DLSSAISNRL QIEQTNDMGK YLGVKSIHGR  1620
VTYHHFTELL DRVNGRLEGW KTKTLSVAGR VTLAKAVLNA IPTYTMQTAV LPTGVCLEIE  1680
KRIRKFIWGH SGPDSQSKLN LVRWDVVTTP IHAGGLGLYR LQNLNQAYMS KLRYRLYTER  1740
DQIWARTLWS KYTNPRRSQL SKNISNAWKG IMSARSITEK GLVQQVRNGK ATQFWMDKWL  1800
KPFPLRFVLT KPLSLPELYA TVEEYWEEGR GWKWDRLAGI IPDDIIESLA GFVLSGDDTL  1860
EDVVGWGLDN SGAFSLSSAY EVATNIMPQS GSTIWTKIWG LHVPHRICFF VWLVMHEKIL  1920
TNVERGRRHL TTNIDCIFCA GRHEDCNHLF RQCKEIQGLW EAGLGTQVVR RLQHLDWTNW  1980
LKVQISGDRS MGIPTTWPER FVTRLWWIWK WRNAMVFQQT RLPLSYKLAW LTKQDEEITS  2040
SFSRHAARGM PKVITVAGAD HWSKPTGGWF KLNVDGSVIT TSGVAGCGGV LRDDTGRWIE  2100
GFTYRIGRCS VADAEAWGVL QGLRMAAHNG IPNLIVESDS KVIIDQLRGA NLRLGQHNNL  2160
IGHCISAAQP FGAIRFTHVL RDQNRLADAL AKKALTYENG LIIWSEAPTE LESLVLQDSL  2220
AGGVLXXXXX XXXXXXXXXX XXXXXXXXXX XRIVWLEECF KLLCSFFGVS PPFFDQKKKC  2280
ARTLCPITCT VNFVIRLFVI SESRFVAPAI VKHESHPLET GLPSISQSTV YMQPWWRGFG  2340
DNGMPTFGQE TNGSISFETN DSQGNAEGGN KEKETNSTAQ SGSNESNSQD EQHLKHASSI  2400
PAVMSEQLGA NSQMELVGHS IMLASYPYAD PQYGGMISYC SPVQSHLFGV HHARMPLPLE  2460
MEEEPVYVNA KQYNGILRRR RVRAKAELEK KAIKARRPYL HESRHQHALR RARGSGGRFL  2520
NTKTLNDMNS KTDEHTQSGA TATTNSGHSS GSEHLSTNSE GQSAVKEMRR AHASSNGDSH  2580
GFPSVHFTES TGNEKGSFLR HGHQDWSSMG NQAPHGAPPS N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-18	2463	2523	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	258	KRKEEQLKEKQRRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019173838.1	0.0	PREDICTED: uncharacterized protein LOC109169412

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	3e-25	nuclear factor Y, subunit A1