PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000209.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 264aa    MW: 29918.1 Da    PI: 8.3189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000209.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.1e-1913105199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffk+l  s +   + l+lp  f  ++ g+k +s+   ++  s +sW+vkl  +k+s+ry++++GW+ Fv++n+L+ gDfvvF l++
  Itr_sc000209.1_g00012.1  13 FFKIL--SATDFPSVLRLPPLFG-KIFGEKLSSMPSLVMAGSRKSWTVKL--QKSSNRYLFADGWSVFVNDNQLEIGDFVVFWLMD 93 
                              77888..5555566799999999.77677889999999999*********..*********************************9 PP

                              S.SEE..EEEEE-S CS
                       B3  87 r.sefelvvkvfrk 99 
                              + s+f  +v+++++
  Itr_sc000209.1_g00012.1  94 NySTF--RVQLYDR 105
                              98999..8888876 PP
2B350.34.4e-16166249995
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                              ++++ + +++pk f+ee g+   ++++++l de+g++We+k+  +k++g+ ++ ++ W +F   n+L  g +++F+++g++++++ 
  Itr_sc000209.1_g00012.1 166 SASTDDEMIIPKGFVEETGIA--GKRKIMLLDEQGNEWEIKI--SKQDGEfVMCGGRWTDFRIVNRLSKGYVCTFEMVGSHGGHPQ 247
                              6677888**********9866..6679***************..9999885666777********************999988887 PP

                              EE CS
                       B3  94 vk 95 
                              ++
  Itr_sc000209.1_g00012.1 248 LQ 249
                              76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-226108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-217108IPR015300DNA-binding pseudobarrel domain
CDDcd100178.70E-1911104No hitNo description
PROSITE profilePS5086313.02811106IPR003340B3 DNA binding domain
PfamPF023621.4E-1613105IPR003340B3 DNA binding domain
SMARTSM010191.4E-1213106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-17155247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-16157243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.126158256IPR003340B3 DNA binding domain
CDDcd100172.29E-13159254No hitNo description
SMARTSM010195.9E-16161254IPR003340B3 DNA binding domain
PfamPF023621.3E-13166250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSSFNMQNEN PSFFKILSAT DFPSVLRLPP LFGKIFGEKL SSMPSLVMAG SRKSWTVKLQ  60
KSSNRYLFAD GWSVFVNDNQ LEIGDFVVFW LMDNYSTFRV QLYDRTCCDK RLSSSRFSPG  120
SSGENSSNLD QVIKVKKESD IEDDKSEMLI GPSKTTTNPS FVTILSASTD DEMIIPKGFV  180
EETGIAGKRK IMLLDEQGNE WEIKISKQDG EFVMCGGRWT DFRIVNRLSK GYVCTFEMVG  240
SHGGHPQLQF HLEKRSRGRP MGRH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176350.11e-172PREDICTED: B3 domain-containing protein REM5-like isoform X1
TrEMBLA0A328DXN01e-85A0A328DXN0_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-16B3 family protein