PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000207.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

BBR-BPC

Protein Properties

Length: 327aa MW: 36501.4 Da PI: 10.0681

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000207.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	386.8	3.3e-118	1	327	1	301
GAGA_bind 1 mdddgsrernkgyye..pa.aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 mdd g r+ g y+ p+ + l +++ +q+m+++aerda+i+ernlalsekkaa++erdma lqrd+a+aern+a++erd+++ Itr_sc000207.1_g00016.1 1 MDDGGP--RENGRYKppPHgQWLMQHQpsMKQIMAIMAERDAAIQERNLALSEKKAALNERDMAILQRDSAIAERNNAIMERDSAI 84 788877..67777774422433333331135***************************************************** PP GAGA_bind 82 lalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161 ++l+++ens++ s +++++q+ +g+k+i++ qq +++ p+l+++++ r+++ ++a p++ a +e + +++k+ +++k + Itr_sc000207.1_g00016.1 85 ATLQYRENSMNtgsmSPSAQSCQITRGVKHIQHPQQhVHHqPHLGKTSYSPRDMHLSDAIPTSPADPEPAKPRRNKRAKEPKPATP 170 *****9999665666789*********9644469*************998887777766666665554444444 PP GAGA_bind 162 kkakkkkkksekskkkvkkesader....................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227 kk++k+ kk +k+ ++ +k + + s+ ++k++dl+ln+vs+Dest+PvPvCsCtG+lr CYkWGn Itr_sc000207.1_g00016.1 171 KKTSKPSKKAKKEADDLNKLQ---EwkgtqeiggasddlnrqlgmSRPDWKDQDLGLNQVSFDESTMPVPVCSCTGVLRPCYKWGN 253 444444443333333333322...24456689************************************************** PP GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GGWqS+CCtt++S+yPLP+ +++r+aRi+grKmS+gaf+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+ Itr_sc000207.1_g00016.1 254 GGWQSSCCTTNLSMYPLPAIPNKRHARIGGRKMSGGAFNKLLSRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 327 ***********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	9.6E-166	1	327	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.2E-104	1	327	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDDGGPRENG RYKPPPHGQW LMQHQPSMKQ IMAIMAERDA AIQERNLALS EKKAALNERD 60 MAILQRDSAI AERNNAIMER DSAIATLQYR ENSMNTGSMS PSAQSCQITR GVKHIQHPQQ 120 HVHHQPHLGK TSYSPRDMHL SDAIPTSPAD PEPAKPRRNK RAKEPKPATP KKTSKPSKKA 180 KKEADDLNKL QEWKGTQEIG GASDDLNRQL GMSRPDWKDQ DLGLNQVSFD ESTMPVPVCS 240 CTGVLRPCYK WGNGGWQSSC CTTNLSMYPL PAIPNKRHAR IGGRKMSGGA FNKLLSRLAA 300 EGHDLSNPVD LKEHWAKHGT NRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019156134.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019156135.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019156136.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019156137.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_019156138.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	1e-145	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A1U7YND6	0.0	A0A1U7YND6_NICSY; protein BASIC PENTACYSTEINE6-like
TrEMBL	H1ZN85	0.0	H1ZN85_TOBAC; GAGA-binding transcriptional activator
STRING	XP_009803495.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5353	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-141	basic pentacysteine 6