PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000207.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

DBB

Protein Properties

Length: 266aa MW: 28968.3 Da PI: 6.8671

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000207.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19	2.9e-06	4	48	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41 C+ +++ e+ fC ++ lC++C +H+ H +v+ Itr_sc000207.1_g00007.1 4 QCDVCHKAEACVFCVADEAALCQSCDRRIHHPnnnnlvsdHPTVS 48 7****************************7324567777777776 PP
2	zf-B_box	24.8	4.6e-08	58	94	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e ++ lfC++++ lC+ C + +Hk Ht Itr_sc000207.1_g00007.1 58 PLCDICQERKAFLFCQQDRAILCRGCDVGIHKAneHT 94 78****99*******************878865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.267	1	49	IPR000315	B-box-type zinc finger
CDD	cd00021	1.37E-6	3	49	No hit	No description
SMART	SM00336	0.004	4	49	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.911	55	102	IPR000315	B-box-type zinc finger
SMART	SM00336	4.1E-14	55	102	IPR000315	B-box-type zinc finger
CDD	cd00021	2.20E-9	58	102	No hit	No description
Pfam	PF00643	4.6E-7	58	94	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MKIQCDVCHK AEACVFCVAD EAALCQSCDR RIHHPNNNNL VSDHPTVSLL QPSPKHSPLC 60 DICQERKAFL FCQQDRAILC RGCDVGIHKA NEHTQKHNRF LLTGVKISAT SSAPHSSSSP 120 SSSSSSAAPT NHTQNPTNTK PAVSPYDGDK GCGNGELMMT SSSISEYLQM LPGFHVEELL 180 DSSYGFCKIG DDNDVLPFWG SDDLESNVST FSSEITPATT AYGGIKNSME AANKSSRKWR 240 DNNNNSFAVP QISTSPFTFK KSRTLC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155883.1	1e-149	PREDICTED: B-box zinc finger protein 21-like
TrEMBL	A0A3Q7GB83	2e-86	A0A3Q7GB83_SOLLC; Uncharacterized protein
STRING	Solyc04g081020.2.1	3e-87	(Solanum lycopersicum)
STRING	XP_009605718.1	6e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1463	23	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-57	salt tolerance homolog2