PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000207.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25318.7 Da    PI: 8.7049
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000207.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.7e-30959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien++nrqvt+skRrng++KKA+EL vLCda+v++i++s++gkl+ey+s
  Itr_sc000207.1_g00004.1  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIIMISTSGKLHEYIS 59
                             79***********************************************86 PP
2K-box61.53.4e-2171141171
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                              yqk+ g +l++++ e++q +l+kL++ ++ L+re+R+++Ge+L++Ls+++L +L +++++s+k iR++K +
  Itr_sc000207.1_g00004.1  71 YQKTVGADLWNHHFEKMQDQLKKLRDVNRALRREIRQRMGEGLNDLSFEQLTELIEDVDNSIKLIRERKVR 141
                              78999999*************************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-39160IPR002100Transcription factor, MADS-box
CDDcd002659.66E-41280No hitNo description
SuperFamilySSF554557.85E-36394IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1183143IPR002487Transcription factor, K-box
PROSITE profilePS5129710.34684173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIIMIST SGKLHEYISP  60
STSTKQLFDQ YQKTVGADLW NHHFEKMQDQ LKKLRDVNRA LRREIRQRMG EGLNDLSFEQ  120
LTELIEDVDN SIKLIRERKV RNVEEIHRNL LLECEARQED PYGLVDHEGD YNSVLGFPNG  180
GPRILALRLQ PDHHHHHHHH GHLHSGGGSD LTTFTLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-16159159MEF2 CHIMERA
6byy_B6e-16159159MEF2 CHIMERA
6byy_C6e-16159159MEF2 CHIMERA
6byy_D6e-16159159MEF2 CHIMERA
6bz1_A7e-16159159MEF2 CHIMERA
6bz1_B7e-16159159MEF2 CHIMERA
6bz1_C7e-16159159MEF2 CHIMERA
6bz1_D7e-16159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1420871e-123HQ142087.1 Ipomoea aquatica MADS (MADS) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155860.11e-137PREDICTED: floral homeotic protein PMADS 1-like
SwissprotP237061e-122DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A484KVP61e-133A0A484KVP6_9ASTE; Uncharacterized protein
STRINGXP_009794650.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]