PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000202.1_g00018.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 945aa MW: 102383 Da PI: 4.8548

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000202.1_g00018.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	38	79	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++d + +G++ +++Ia+ + ++t +c+++++k Itr_sc000202.1_g00018.1 38 PWTSEEREIFIDKLATFGKD-FSKIASFLD-HKTTADCIEFYYK 79 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.5	8.4e-10	252	292	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE + +++av +G++ ++ I+r + +R++ qck ++ Itr_sc000202.1_g00018.1 252 DWTDEEKLMFIQAVSSYGKD-FTMISRFVK-TRSRDQCKIFFS 292 5***************99.****9.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.12E-14	22	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-6	29	80	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.855	34	85	IPR017884	SANT domain
SMART	SM00717	1.6E-9	35	83	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-7	37	79	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	11.996	248	299	IPR017884	SANT domain
SMART	SM00717	1.9E-8	249	297	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.56E-11	250	299	IPR009057	Homeodomain-like
Pfam	PF00249	5.4E-8	252	291	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-6	252	293	IPR009057	Homeodomain-like
CDD	cd00167	4.19E-7	253	291	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence Send to blast
MPALILDKKE KMISRFISNN GLVEDPCSSE KERLMINPWT SEEREIFIDK LATFGKDFSK 60 IASFLDHKTT ADCIEFYYKN HKSDCFAKTK RKPGYTKQGK STYLVASGGK RWNREVNAVS 120 LDILGAASAA VAANVDDEIG FQKCTSKYLL GVTSETKMPR HDELDVSNSL DVCNSDRETV 180 AADVLAGICG SLSSEAMSSC ITSSIDPSDG YHEWKYQKVS SSTRRPLTPE VTQSVDDETC 240 SDESCGEMDP TDWTDEEKLM FIQAVSSYGK DFTMISRFVK TRSRDQCKIF FSKARKCLGL 300 DTISPQPGNV VREDANGGGS DAEDACLLET DSSICIKESG IKVGSPNMKL NQELDLAEGM 360 DVKPDLNSSE ENGDNGTGDL DSIDTELMSN HMSPNACDVD KQEIESDRDI KNEANVVVQG 420 AGNVISSSFQ SEPVVDKSGD VCLPDKNCSD ANAREGDDVA KNSTEESRDH LAPLPECSLN 480 VKSGLQLAGY DTSTIADTSS GMDDISGCHT KGDSESDSRL KSDVSSLQVS PPMQSPSQDS 540 AVIACAASNG KLTNLDLESV GDLKHLKSSG VSEQHISEHI ESPQIIGNYA LPESIAKENG 600 DFGCKSSASS VQGLPKADRN TQSARFKTGD CVLRKCSSSP HGSSITEQPF PNQRQTQSSS 660 SSEVGKPSRN GDVKLFGQIL TKPSSQQNSQ WREETSTTTQ HPKVNNSKSF GVNDGIPAAA 720 PGKFECNNFR GSENLPVRSY GYWDGNRIQT GFSSLPDSTI LLAKYPAAFV NYAMPSTKME 780 QPPTSFHAVV KSSERNLNGV PVYPREISSS NGVAADFQVY RSREVQPFAL DMKQRPEVSF 840 SEMQRRSAGF DVVSGMPQQA RGRLGINVVG RGGILVGGGQ CTGVSDPVAA IKMHYAKVDQ 900 FGGQGGSMMR EEDTWRGKGE IGSSNSSSYD MIGQWRTASK GRLFD

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence Send to blast

MPALILDKKE KMISRFISNN GLVEDPCSSE KERLMINPWT SEEREIFIDK LATFGKDFSK  60
IASFLDHKTT ADCIEFYYKN HKSDCFAKTK RKPGYTKQGK STYLVASGGK RWNREVNAVS  120
LDILGAASAA VAANVDDEIG FQKCTSKYLL GVTSETKMPR HDELDVSNSL DVCNSDRETV  180
AADVLAGICG SLSSEAMSSC ITSSIDPSDG YHEWKYQKVS SSTRRPLTPE VTQSVDDETC  240
SDESCGEMDP TDWTDEEKLM FIQAVSSYGK DFTMISRFVK TRSRDQCKIF FSKARKCLGL  300
DTISPQPGNV VREDANGGGS DAEDACLLET DSSICIKESG IKVGSPNMKL NQELDLAEGM  360
DVKPDLNSSE ENGDNGTGDL DSIDTELMSN HMSPNACDVD KQEIESDRDI KNEANVVVQG  420
AGNVISSSFQ SEPVVDKSGD VCLPDKNCSD ANAREGDDVA KNSTEESRDH LAPLPECSLN  480
VKSGLQLAGY DTSTIADTSS GMDDISGCHT KGDSESDSRL KSDVSSLQVS PPMQSPSQDS  540
AVIACAASNG KLTNLDLESV GDLKHLKSSG VSEQHISEHI ESPQIIGNYA LPESIAKENG  600
DFGCKSSASS VQGLPKADRN TQSARFKTGD CVLRKCSSSP HGSSITEQPF PNQRQTQSSS  660
SSEVGKPSRN GDVKLFGQIL TKPSSQQNSQ WREETSTTTQ HPKVNNSKSF GVNDGIPAAA  720
PGKFECNNFR GSENLPVRSY GYWDGNRIQT GFSSLPDSTI LLAKYPAAFV NYAMPSTKME  780
QPPTSFHAVV KSSERNLNGV PVYPREISSS NGVAADFQVY RSREVQPFAL DMKQRPEVSF  840
SEMQRRSAGF DVVSGMPQQA RGRLGINVVG RGGILVGGGQ CTGVSDPVAA IKMHYAKVDQ  900
FGGQGGSMMR EEDTWRGKGE IGSSNSSSYD MIGQWRTASK GRLFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	3e-14	1	86	9	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	3e-14	1	86	9	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196451.1	0.0	PREDICTED: uncharacterized protein LOC109190430
TrEMBL	A0A1J6IEN8	0.0	A0A1J6IEN8_NICAT; Uncharacterized protein
STRING	XP_009803598.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-86	MYB family protein