PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000199.1_g00031.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 253aa MW: 29079.3 Da PI: 4.747

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000199.1_g00031.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.9e-16	43	81	7	47
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ Itr_sc000199.1_g00031.1 43 YEEKMVIDLHAQLGNR-WSKIASYLP-GRTDNEIKNHWNTH 81 599***********.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.297	1	31	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.9E-5	17	30	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.9E-21	18	91	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-24	31	87	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.886	32	86	IPR017930	Myb domain
SMART	SM00717	2.3E-13	36	84	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-13	43	81	IPR001005	SANT/Myb domain
CDD	cd00167	7.19E-11	44	82	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MTVVRWRFLN MTTARLLRCG KSCRLRWTNY LRPDLKRGLL SDYEEKMVID LHAQLGNRWS 60 KIASYLPGRT DNEIKNHWNT HIKKKLKKMG IDPVTHRPLC SDDNKETAKQ RESVQEMDQR 120 EVVETPLMDQ STITDAFEED NKNMETSPTL VDPHQVNNNN GFFFSSPDNN EILATSLSSS 180 SSSSTSSLNS HGGFVSSVED DNNNKNNNVG GLFEDLVDFL PGFDWNHDYI NDVGLWVEDD 240 DYFKELCFVD DIC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-20	18	86	40	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182681.1	1e-123	PREDICTED: protein ODORANT1-like
TrEMBL	A0A0D2RAD8	5e-57	A0A0D2RAD8_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NBR7	1e-57	A0A1U8NBR7_GOSHI; protein ODORANT1-like
TrEMBL	A0A2P5SQZ9	1e-57	A0A2P5SQZ9_GOSBA; Uncharacterized protein
STRING	Gorai.008G060100.1	8e-58	(Gossypium raimondii)
STRING	XP_009616533.1	7e-58	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	6e-55	myb domain protein 20