PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000193.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 341aa MW: 37210.2 Da PI: 6.6848

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000193.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	139	195	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l++ Itr_sc000193.1_g00017.1 139 KRAKRILANRQSAARSKERKAHYITELERKVQTLQTEATTLSAQLTLFQRDTTGLTN 195 9****************************************9998877666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-16	135	199	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	137	200	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.2E-10	139	194	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-8	139	193	No hit	No description
Pfam	PF00170	4.6E-9	139	187	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.99E-23	140	189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MQDPSGSKPF QTAPFPSAFR QSHHRRAHSE VNFRLPEDLD LASDPFDAAP AGSFESEDDF 60 FSTYMDIEKL GGGGGSGAVD GSAAAESGGN GVKSSSRPRH RHSNSVDSSG LLLGDNGAIE 120 AKKAMAPDKL AELWTIDPKR AKRILANRQS AARSKERKAH YITELERKVQ TLQTEATTLS 180 AQLTLFQRDT TGLTNENTEL KLRLQAMEQQ AQLRDALNEA LKQEVERLRI ATGEMAAPSD 240 AYNLGMQHIP YNQSTLFSSH QPQSGPSEPQ NMQMPQYHPL GPNISTPHHA IFAANHAQAL 300 PHTLHQDPLG RFQGLDINSR GSHLIKTEVP TISASESSST F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192118.1	0.0	PREDICTED: transcription factor RF2b-like isoform X1
Swissprot	O22873	1e-111	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A3Q7GV72	1e-165	A0A3Q7GV72_SOLLC; Uncharacterized protein
STRING	Solyc06g048630.2.1	1e-157	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-102	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]