PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000193.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 244aa MW: 26244.2 Da PI: 7.7658

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000193.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.6	1.4e-40	21	120	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l ++pe+ r da++slvyeA+ r+rdPvyG++g+i +lqqq Itr_sc000193.1_g00003.1 21 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLMDVPESLRADAANSLVYEANLRLRDPVYGCMGTIIALQQQ 106 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 ++ l+ael+++++e Itr_sc000193.1_g00003.1 107 VQALQAELNEVRAE 120 ********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.019	20	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-41	21	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MGLGRRHNVL GPAGTLNTVT PCAACKLLRR RCAQECPFSP YFSPLEPHKF ASVHKVFGAS 60 NVSKMLMDVP ESLRADAANS LVYEANLRLR DPVYGCMGTI IALQQQVQAL QAELNEVRAE 120 IMRYKFGESA ANIIIPSPQV SFFLTSGAVS IAAAPPPLPP PPPPLPPPVL LPRSSSFSLY 180 TPAPPSAASD NADFADYDPT ISGQDVCFPT MLGYPEPKGD LVSGLPRLGR SRHQAMGHLC 240 DYSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-40	21	128	11	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-40	21	128	11	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192512.1	1e-105	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	2e-67	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2I4EQQ5	4e-78	A0A2I4EQQ5_JUGRE; LOB domain-containing protein 15-like
TrEMBL	A0A3S3NG72	3e-78	A0A3S3NG72_9MAGN; LOB domain-containing protein 15
STRING	XP_002520837.1	8e-78	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-68	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]