PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000190.1_g00034.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 705aa    MW: 77308.3 Da    PI: 6.561
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000190.1_g00034.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07291311526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C++f++ G C++Gd C +aHg
  Itr_sc000190.1_g00034.1 291 PCPDFRK-GACRRGDMCEYAHG 311
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.48E-1619153IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.8E-1822165IPR020683Ankyrin repeat-containing domain
SMARTSM0024813002353IPR002110Ankyrin repeat
CDDcd002042.68E-1325148No hitNo description
PfamPF127961.2E-965139IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.82270145IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02870100IPR002110Ankyrin repeat
PROSITE profilePS5008811.247105140IPR002110Ankyrin repeat
SMARTSM002480.0086105137IPR002110Ankyrin repeat
SMARTSM003564.0E-6286312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4290313IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5291311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582291313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4319349IPR000571Zinc finger, CCCH-type
SMARTSM0035639321344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MITLDNSLAT IMNINHLTVE TEDTFSSLLE LAANNDIEGV KRWIDSDPSS IDEVGQWYGR  60
QKGSKQMVLE HRTPLMVAAT YGSVDVLKLI LSLPEIDVNR SCGRDKTTAL HCAASGGSRN  120
ALDAIKLLLE AGADPKLADA NGQHPRDVLA VSPKFLATKL CLENLLRCDS IVEQKLSVLT  180
TNSNSNSPPL SPSSGNQSPS SASDSTSSPK SEKFNQLNAS STSEKKEYPI DPSLPDIKNS  240
IYSTDEFRMF SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPDFRKGAC  300
RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TKCNRRVCFF AHTQEELRPL YVSTGSAVPS  360
PRSNTSAANA MDFAAAMGLI PGSPSSVSVM SPSPFTPPMS PSNNGLSNMG WPQQNVPTLH  420
LPGSNLQSSR LRSSLHARDI PTEELSNLPD FDVQQKQLLN ELANSLNRSA RSKTLAPSNL  480
DDLFSAESSS SGYSDQALAQ ACFSPTHKSA VLNQFQQQQS MLSPINTNFS PKNTDNSLLQ  540
ASFGVQSSGR MSPRIMDPIS PLSSRVSLLA QREKQQQFRS LSSRDLGSNA SGPVDFSSDA  600
WSKWGPSEGK PDWAVKSEEF GKLRRSSSFE LANNGEEPDL SWVQSLVKES PQEMKDKSTP  660
HMSTIAGFGA TSAEGSSSNS QMDQIDQSTL NAWLEQMHLD QLMAQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154512.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3ZKG80.0A0A1S3ZKG8_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009618285.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]