PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000190.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 704aa    MW: 78383 Da    PI: 9.7116
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000190.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-111769348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                             rW t+E++ll+ av+++G+++W+++a +++         +++++c++++++++
  Itr_sc000190.1_g00005.1 17 RWGTWEELLLAGAVNRHGTKSWDSVADELQkrssvptVLLSPESCRLKYLDLK 69
                             8************************************89**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1561069IPR017877Myb-like domain
SuperFamilySSF466895.11E-51271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-41350IPR009057Homeodomain-like
SMARTSM007171.4E-51471IPR001005SANT/Myb domain
CDDcd001678.26E-61769No hitNo description
PfamPF002491.1E-101769IPR001005SANT/Myb domain
SuperFamilySSF473703.66E-14304420IPR001487Bromodomain
SMARTSM002978.4E-12320425IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.6E-12320421IPR001487Bromodomain
CDDcd043692.51E-11327420No hitNo description
PfamPF004396.0E-9329409IPR001487Bromodomain
PROSITE profilePS5001411.243335406IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MAKSDGTADN TPEKEARWGT WEELLLAGAV NRHGTKSWDS VADELQKRSS VPTVLLSPES  60
CRLKYLDLKR RFSSGEVNGV DDECGERTEA AVPLLEELRR LRVAELRREV ERYDISIVSL  120
QLKVKTLTEE RDRSLREDEK SDPAAMSENQ EIRCEEKNEG DVEITPESDA GEPVTGDKDQ  180
QSMNESNSTD QKDANARTGT KDDGKHLEAI LTGNVEDEPD KVKEGKPGRD DSCNCSSNSV  240
EKEPVHEVVK LKTEPVTDST ELLESVAESK GNEEGTKENS DVQSSASKSR KTGDADRSNR  300
RSSSRDERAN TNESPAVKEM PVEFQPLINF LEKIESNKHY SLFMRRLESQ ETEDYKLLIR  360
QHIDLEMVRA WLEEGRYLVC KAKFFRDLLL LANNAIIFFR KNTSEFLAAM ELRQLVSSEL  420
PRAKLYSASM KQKSIKLASL TKEENSKPAE SLLLKTKQSG SLVVCRKRSS ITPKSSGSSS  480
GVDKRREQIA RRPDDKPVTN SKQQPSQTVT NSGENRITKK RTRDRFSSAS TTSRRNEKNS  540
STTIPTKNSA AVVEKTQGKR ERDPSPQNHQ SKSENTNDKS STDLKKRSAA NFLNRMKQGS  600
SSNSGSLLDA LKSTPLSADS KGGGGGYEKK RNESGKSSGR KEPVSSKPPE ATQQTKEKSS  660
LSKKSTGRPP KRGAAPSPQS SKRNLDVDHS ESLASKQPKK RARR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154285.10.0PREDICTED: uncharacterized protein LOC109150750 isoform X2
TrEMBLA0A484LCE60.0A0A484LCE6_9ASTE; Uncharacterized protein
STRINGXP_009760270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.14e-74DNA-binding bromodomain-containing protein