 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000185.1_g00020.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
NAC |
| Protein Properties |
Length: 201aa MW: 23366.4 Da PI: 9.9699 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000185.1_g00020.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 66.2 | 9.6e-21 | 7 | 129 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyW 83
p G+rF+Ptd el+ +L+ v g+ ++ i e ++y+ ePw+L ++ee+ yf +k +kk+++++r +r++ +g+W
Itr_sc000185.1_g00020.1 7 PSGYRFRPTDIELL-GFLALFVLGSLpFSW-YPIMERNLYSGdEPWQLF--GNSEERVRYFITKLKKKNPRNSRYRRSIGdgKGTW 88
89************.788888877762555.6699999998659****6..34566788******************87655899* PP
NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
ka+ k k++ + +g+ +g k++L + ++ + + +W+m+ey
Itr_sc000185.1_g00020.1 89 KAQDKGKAISR-SGKIIGYKRSLRYENK--GSEHDGQWLMKEYY 129
*********99.999*********9843..333579*******6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MGQAKIPSGY RFRPTDIELL GFLALFVLGS LPFSWYPIME RNLYSGDEPW QLFGNSEERV 60
RYFITKLKKK NPRNSRYRRS IGDGKGTWKA QDKGKAISRS GKIIGYKRSL RYENKGSEHD 120
GQWLMKEYYF PDKVRENLEV SLRDTVLCRI KRKQNWDNTN HNESTIAEGI RDIIGDFTPK 180
LEPSESDTTR TTLTLALSTD D
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-16 | 1 | 155 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-16 | 1 | 155 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-16 | 1 | 155 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-16 | 1 | 155 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-16 | 1 | 155 | 12 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 5e-16 | 1 | 155 | 12 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
