PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000180.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 319aa    MW: 34450.9 Da    PI: 9.0731
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000180.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.5e-18168222256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Itr_sc000180.1_g00019.1 168 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTK 222
                              678899***********************************************98 PP
2HD-ZIP_I/II127.46.3e-41168257191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq+++LEesF+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +e
  Itr_sc000180.1_g00019.1 168 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQE 253
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr +l
  Itr_sc000180.1_g00019.1 254 LR-AL 257
                              *9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.1E-686124IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.605.7E-17149225IPR009057Homeodomain-like
SuperFamilySSF466891.88E-18154225IPR009057Homeodomain-like
PROSITE profilePS5007116.633164224IPR001356Homeobox domain
SMARTSM003891.1E-14166228IPR001356Homeobox domain
PfamPF000461.8E-15168222IPR001356Homeobox domain
CDDcd000861.60E-15168225No hitNo description
PROSITE patternPS000270199222IPR017970Homeobox, conserved site
PfamPF021837.1E-11224258IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.2E-26224267IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELALSLGGS NGNLTRKPFA LLENKSSAVA IGGDLGFCME NMNNSGGGGR DEPPPVQLDL  60
LPLSPVHHRQ SGSPLRLPWL SGNLGAEPGV KALDMNRRPA GVATAEEAED AAALSSPNSA  120
ASSFKMDFSI FRNGLLGKRD SAGDGGDRER GGSSNSRASD DDENGLGRKK LRLTKEQSAF  180
LEESFKEHNT LNPKQKLALA KQLSLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL  240
TEENRRLQKE LQELRALKAS QPFYMQLPAT TLTMCPSCER VASSTAAATP TTAAAAHGGA  300
KPKLFPFPPQ QVHAPQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216224RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186285.11e-177PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotP466653e-90HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A068URD41e-129A0A068URD4_COFCA; Uncharacterized protein
STRINGVIT_08s0007g06670.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-67homeobox from Arabidopsis thaliana