 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc000180.1_g00019.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 319aa MW: 34450.9 Da PI: 9.0731 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000180.1_g00019.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.3 | 5.5e-18 | 168 | 222 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Itr_sc000180.1_g00019.1 168 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTK 222
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 127.4 | 6.3e-41 | 168 | 257 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk+rl+keq+++LEesF+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +e
Itr_sc000180.1_g00019.1 168 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQE 253
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreel 91
Lr +l
Itr_sc000180.1_g00019.1 254 LR-AL 257
*9.55 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MELALSLGGS NGNLTRKPFA LLENKSSAVA IGGDLGFCME NMNNSGGGGR DEPPPVQLDL 60
LPLSPVHHRQ SGSPLRLPWL SGNLGAEPGV KALDMNRRPA GVATAEEAED AAALSSPNSA 120
ASSFKMDFSI FRNGLLGKRD SAGDGGDRER GGSSNSRASD DDENGLGRKK LRLTKEQSAF 180
LEESFKEHNT LNPKQKLALA KQLSLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL 240
TEENRRLQKE LQELRALKAS QPFYMQLPAT TLTMCPSCER VASSTAAATP TTAAAAHGGA 300
KPKLFPFPPQ QVHAPQAAS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 216 | 224 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
