PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000178.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 308aa    MW: 34387.9 Da    PI: 4.4204
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000178.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1961114356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Itr_sc000178.1_g00032.1  61 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 114
                              56689************************************************9 PP
2HD-ZIP_I/II127.84.5e-4160152193
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++d+lk++ e+L+ ++e+
  Itr_sc000178.1_g00032.1  60 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDSLKHNYETLQLDKES 145
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelke 93 
                              L +e+++
  Itr_sc000178.1_g00032.1 146 LLKEIRD 152
                              *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-2046118IPR009057Homeodomain-like
PROSITE profilePS5007117.47556116IPR001356Homeobox domain
SMARTSM003891.0E-1759120IPR001356Homeobox domain
CDDcd000864.90E-1761117No hitNo description
PfamPF000463.5E-1661114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-2063123IPR009057Homeodomain-like
PRINTSPR000318.5E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000318.5E-696112IPR000047Helix-turn-helix motif
PfamPF021833.2E-16116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKRSLDSSDS LGALMSICPP TTDDPSQGNS GGHVYGGEFQ SMLEGLDEEE GGAGGGHVAE  60
KKRRLSVEQV KALEKNFEVE NKLEPERKVK LAQELGLQPR QVAVWFQNRR ARWKTKQLER  120
DYGVLKANFD SLKHNYETLQ LDKESLLKEI RDLKAKLNGE SKGWVKEEGM ESEGNDGNPK  180
SDETELNFDA AAETAAGAAA VTADFKDGSS DSDSSVILNE ETSSYHSSEA FLISHEPFPD  240
CFKFPEHFKP ATPVLADAAV TYPPLQFVKI EEQFSSEESC STLFSDEQPP TLHWYCPESW  300
NNWKEDEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177347.11e-154PREDICTED: homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J12e-70ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A1S4CFT41e-109A0A1S4CFT4_TOBAC; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_009588928.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-62homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]