PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000168.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 419aa    MW: 47081.9 Da    PI: 8.0418
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000168.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.52.4e-103146419103374
                     GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                              le ++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   ++  l+ +g++L+++Ae+++vpf+f++ v+   
  Itr_sc000168.1_g00012.1 146 LETMKDEKRVHIIDFQIGQGSQWVTLIQAFAARPGGPPEIRITGIDDSTSAyaRRGGLSIVGKNLSNLAESFKVPFQFHA-VTMPG 230
                              799********************************************998899999************************.67788 PP

                     GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                               + +le+L +++gEalaVn++++lhr++desv ++   +rd++L+lvksl+Pkvv++ve+e++ ns+ F  rfleal+yysa+f+s
  Itr_sc000168.1_g00012.1 231 CKAQLENLTIQRGEALAVNFAFMLHRMPDESVGTSTdnHRDQLLRLVKSLNPKVVTLVEHESQSNSPAFYPRFLEALDYYSAMFES 316
                              8899**************************98665555************************************************ PP

                     GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                              l+++lpr++++ri+vE+++lgr++vn++aceg+er++rhe l kW++r+++aGF+p+pls+ ++ ++k+ll++++++ yr+ee++g
  Itr_sc000168.1_g00012.1 317 LDMTLPRNHKQRINVEQHCLGRDVVNIIACEGTERVKRHELLDKWKSRFRMAGFSPYPLSSLVNGTIKTLLENYSDK-YRLEERDG 401
                              ***************************************************************************55.******** PP

                     GRAS 357 slvlgWkdrpLvsvSaWr 374
                              +l+lgW++r Lv+ +aW+
  Itr_sc000168.1_g00012.1 402 ALYLGWRNRDLVASCAWK 419
                              *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.4E-101146419IPR005202Transcription factor GRAS
PROSITE profilePS5098547.138146400IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MQASQRLRTS SMSNTMYYQP VQKAEPYCLP QFQNLDHQPS YTNSINGGNH AIHPHCASYY  60
TELSLVSRAH GLHNSSSTLS FSPNGNSVSQ QESQAYPSGL HQSPAPSYPI RESCFGGEVN  120
DLDFKDNVAR NRQLGGNDCG HPPRGLETMK DEKRVHIIDF QIGQGSQWVT LIQAFAARPG  180
GPPEIRITGI DDSTSAYARR GGLSIVGKNL SNLAESFKVP FQFHAVTMPG CKAQLENLTI  240
QRGEALAVNF AFMLHRMPDE SVGTSTDNHR DQLLRLVKSL NPKVVTLVEH ESQSNSPAFY  300
PRFLEALDYY SAMFESLDMT LPRNHKQRIN VEQHCLGRDV VNIIACEGTE RVKRHELLDK  360
WKSRFRMAGF SPYPLSSLVN GTIKTLLENY SDKYRLEERD GALYLGWRNR DLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-44146419102375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159584.11e-178PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_019159585.11e-178PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL71e-150PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2K1XWW21e-165A0A2K1XWW2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16230.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-153GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]