PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000168.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 537aa    MW: 59300.6 Da    PI: 6.4765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000168.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.5e-30233290260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK v+g+ef rsYY+Ct+++C++k++vers+ d++++ei Y g+H+h+k
  Itr_sc000168.1_g00011.1 233 EDGYNWRKYGQKLVRGNEFIRSYYKCTHTNCTAKRQVERSQ-DGHITEINYIGNHEHPK 290
                              7****************************************.***************85 PP
2WRKY37.64.3e-12405427123
                              ---SS-EEEEEEE--TT-SS-EE CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                              ++Dgy+WrKYGqK vkg+++prs
  Itr_sc000168.1_g00011.1 405 VNDGYRWRKYGQKLVKGNPNPRS 427
                              58********************9 PP
3WRKY56.94e-184544951859
                              -SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY  18 sefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              s+f  sYYrC+ agCpvkk+ver+++dpkvv++tYeg+H+h+
  Itr_sc000168.1_g00011.1 454 SNFMWSYYRCSNAGCPVKKHVERASHDPKVVITTYEGQHDHD 495
                              77889************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.022227291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-26227291IPR003657WRKY domain
SuperFamilySSF1182901.16E-23230291IPR003657WRKY domain
SMARTSM007741.7E-32232290IPR003657WRKY domain
PfamPF031068.7E-23233289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-31391425IPR003657WRKY domain
SuperFamilySSF1182907.19E-10397427IPR003657WRKY domain
PROSITE profilePS5081129.941400497IPR003657WRKY domain
SMARTSM007745.7E-35405496IPR003657WRKY domain
PfamPF031067.7E-8406428IPR003657WRKY domain
SuperFamilySSF1182902.75E-14453497IPR003657WRKY domain
PfamPF031064.7E-13454494IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-31458497IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MEEGVDEGSL GKLQPKREPN TGSLESETEH KESDKLEPAE GVSGELQKRL SPNVKAEASE  60
SSESKVTVPD KCETVPSDMQ QRQGVVNGSS VSQSEKEKSS HSGVQVKDGE EVQQKQGVGS  120
DTDASQFSQV SIVPKKESDG AGHEQIKDEK IHGTETLALS VIPEKNSDNP QELQIQSMEV  180
LATHSNQARV AYVKPHEKGL DKLQPRRNPE IGAHTPQFDQ RSPPSKAPEK PSEDGYNWRK  240
YGQKLVRGNE FIRSYYKCTH TNCTAKRQVE RSQDGHITEI NYIGNHEHPK PQNSPQINAP  300
TILPIQMRRP DLPIMTPSEG TQSVTLGEKC ETPEPKQITS PVGVASADIG ARDSVLQSHN  360
LRDEDDHCGG PDSKKQKKCL SSPDDNKPHG EPRHVVQTMS EVDIVNDGYR WRKYGQKLVK  420
GNPNPRSSHL VDCIKASKKL SLQLHAYMPE PLDSNFMWSY YRCSNAGCPV KKHVERASHD  480
PKVVITTYEG QHDHDMPASR TITQNSGEGD ATSGESRPES GENKHVGLDM VVHIGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-28393497274WRKY transcription factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159473.10.0PREDICTED: WRKY transcription factor 1-like
TrEMBLA0A484KER10.0A0A484KER1_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-63zinc-dependent activator protein-1