PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000167.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 451aa    MW: 50171.8 Da    PI: 7.8322
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000167.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17253287135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Itr_sc000167.1_g00020.1 253 CLHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 287
                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.108.2E-15247285IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.69247283IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-18247297IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-16248311No hitNo description
CDDcd002024.92E-14252299No hitNo description
PfamPF003201.7E-15253287IPR000679Zinc finger, GATA-type
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
METPEFFHGG YYEGEFSPDK RVLEKNGDNF IVEELLDLPN DDGLVAVTDG GALEATGDSS  60
TVTALENSCN SSFSGEMTCH HLLDGQFSSD FSVPYDDLAE LEWLSNIVEE PFSSEDMEKM  120
QLISGIKARS DETSETQMVR PDNTRANAVP MFRPDVSIPA KARSKRSRVA PGNWTSRILA  180
VSGPTTNMTS TTTTTTTTAI MPTPTISSSS ESDIALNHPR KRMKATMKKK ESSASGGAAA  240
AAALSNNSEG RRCLHCDTDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPASSPTFV  300
LAKHSNSHRK VLEIRRQKEL LRAQHQQPQF LHQNMMFDVS NANDYLIHQH VQGKSMRHQL  360
DVEALKLVIC YSRFKLIGCH VMSSKEKTKL MLLFVFHHNG FISTPLDRSF TLLGRMPFAA  420
CHMKFFNLGG RSRFHSIFHD LKGPEEPYAS P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184900.10.0PREDICTED: GATA transcription factor 12-like
TrEMBLA0A1S4DLF51e-138A0A1S4DLF5_TOBAC; GATA transcription factor
TrEMBLA0A1U7WDU71e-138A0A1U7WDU7_NICSY; GATA transcription factor
STRINGXP_009776828.11e-138(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-81GATA transcription factor 9