 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc000162.1_g00029.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
Whirly |
| Protein Properties |
Length: 303aa MW: 33374.1 Da PI: 9.385 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000162.1_g00029.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 211.6 | 7.9e-66 | 104 | 242 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsn 86
s+yk+kaal+v + +p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sceffhdp +++s+
Itr_sc000162.1_g00029.1 104 SIYKGKAALTVVPCAPEFSPLDSGAFKLSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTELGSLISLGAKDSCEFFHDPNKGKSD 189
7************************************************************************************* PP
Whirly 87 eGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
eGkv+k+lk+ePlpdGsG+f+nlsv+n l++++e++++Pv+kaefavl s+++
Itr_sc000162.1_g00029.1 190 EGKVKKVLKIEPLPDGSGHFFNLSVQNRLLNVDENIYIPVAKAEFAVLVSAFN 242
*************************************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0042162 | Molecular Function | telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MGTMLNPCLS SSSSTRGLHT QTPLFSHPFQ SLSSRSSLST LFKSSSLPAQ KPLQWRKLSL 60
ECRHSDYFEP HQQQNQWASP NNSSLSSQPG IHRTLPPKVF IGYSIYKGKA ALTVVPCAPE 120
FSPLDSGAFK LSKEGFVLLQ FAPAAGVRQY DWGRKQVFSL SVTELGSLIS LGAKDSCEFF 180
HDPNKGKSDE GKVKKVLKIE PLPDGSGHFF NLSVQNRLLN VDENIYIPVA KAEFAVLVSA 240
FNKGSAGIIF LPKICAMQPL SVLFVLPYLL GWHTCVSSFG PEDANYANNT TNPRSGADFE 300
WRR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 1e-109 | 97 | 301 | 36 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 1e-109 | 97 | 301 | 36 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 1e-109 | 97 | 301 | 36 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 1e-109 | 97 | 301 | 36 | 218 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
