PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000162.1_g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 256aa MW: 29117.2 Da PI: 5.0897 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 49 | 102 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq++ Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa+ k Itr_sc000162.1_g00021.1 49 KKRRLAPEQVRFLERSFEVENKLEPERKVQLANQLGLQPRQVAIWFQNRRARCK 102 455899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 131.8 | 2.5e-42 | 48 | 139 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 ekkrrl+ eqv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR ktkq+Ekdy++Lk++yd+lk+++++L+k++++ Itr_sc000162.1_g00021.1 48 EKKRRLAPEQVRFLERSFEVENKLEPERKVQLANQLGLQPRQVAIWFQNRRARCKTKQIEKDYDSLKATYDKLKADHDSLSKQNQT 133 69************************************************************************************ PP HD-ZIP_I/II 87 Lreelk 92 Lr+e++ Itr_sc000162.1_g00021.1 134 LRNEVR 139 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.698 | 44 | 104 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-19 | 45 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-19 | 47 | 108 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 49 | 102 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-16 | 49 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 51 | 112 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.1E-6 | 75 | 84 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 79 | 102 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.1E-6 | 84 | 100 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.6E-16 | 104 | 145 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDSDNMSTIN TSVWISNTDP SVHEDCGEEM VKGGNCNEEC EGCFYQGEKK RRLAPEQVRF 60 LERSFEVENK LEPERKVQLA NQLGLQPRQV AIWFQNRRAR CKTKQIEKDY DSLKATYDKL 120 KADHDSLSKQ NQTLRNEVRL LTDKLLIQEQ QQGNPKSETN DANGPLKQPS CGGVVSTAKK 180 GENFPMVVSK HENGSSDSSH VLDSDFSQDN EDDDSLKRSL FQPFLKLENH GFQTQPSSCN 240 LGFSLEDHTT SSWLWP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 104 | RRARCKTKQ |
2 | 213 | 218 | DSLKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019164970.1 | 1e-157 | PREDICTED: homeobox-leucine zipper protein HAT7 isoform X1 | ||||
Swissprot | Q6K498 | 2e-41 | HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q9XH37 | 2e-41 | HOX4_ORYSI; Homeobox-leucine zipper protein HOX4 | ||||
TrEMBL | A0A2G9HHP0 | 2e-65 | A0A2G9HHP0_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain | ||||
STRING | Solyc05g006980.2.1 | 6e-66 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-42 | homeobox 1 |
Publications ? help Back to Top | |||
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