PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000159.1_g00042.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 894aa MW: 98360.6 Da PI: 8.4928

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000159.1_g00042.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.4	1.6e-20	116	171	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L+ rqVk+WFqNrR+++k Itr_sc000159.1_g00042.1 116 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLDIRQVKFWFQNRRTQMK 171 688999***********************************************999 PP
2	START	207.2	6.2e-65	325	549	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 ela++a++elvk+a+a+ep+Wv+s e++n++ ++++f++ + + +ea+r++g+v+ +++ lve+l+d++ +W e+++ Itr_sc000159.1_g00042.1 325 ELALAAMDELVKMAQADEPLWVRSMeegrEILNQEQYVKTFTPCIGlrpngFVSEASRETGMVIINSMALVETLMDSN-KWAEMFP 409 5899************************************9999****************************.*** PP ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS START 78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152 + +t++vi sg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + + +++lpSg+ Itr_sc000159.1_g00042.1 410 cliaRTSTTDVIASGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPVFPNSRRLPSGC 495 *****************************************************************99899999***** PP EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++ng+skvtwveh++++++++h+l+r++++ g+ +ga++wvatlqrqce+ Itr_sc000159.1_g00042.1 496 VVQDMPNGYSKVTWVEHAEYEESVVHQLYRQMISAGMGFGAQRWVATLQRQCEC 549 **************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-21	102	173	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.3E-20	103	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	113	173	IPR001356	Homeobox domain
SMART	SM00389	6.7E-18	114	177	IPR001356	Homeobox domain
CDD	cd00086	1.45E-17	116	173	No hit	No description
Pfam	PF00046	4.5E-18	116	171	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.623	316	552	IPR002913	START domain
SuperFamily	SSF55961	1.0E-32	319	549	No hit	No description
CDD	cd08875	1.86E-121	320	548	No hit	No description
Pfam	PF01852	1.4E-56	325	549	IPR002913	START domain
SMART	SM00234	2.2E-49	325	549	IPR002913	START domain
SuperFamily	SSF55961	5.49E-13	568	699	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MNFGGFLDNS FAGGFGGGGG GAMPGGPVAH PCLVPQSLAK SMFNSPGLSL ALQTGMEGQG 60 EVARIGESFE ANNNGGHNGS GRRSREEEPE SRSGSDNLEG VSGDDQDAAD DKPPRKKRYH 120 RHTPQQIQEL EALFKECPHP DEKQRLELSK RLCLDIRQVK FWFQNRRTQM KTQLERHENS 180 ILRQENDKLR AENMAIREAL RNPICNNCGA PAMIGEISLE EQHLRIENVR LKDELDRVCA 240 LAGKFLGRPV SSLTTSMAPP LPNSSLELGV GSNGFGELSV VPTTTLPLAP PDFGVGISSA 300 LPVVQPTRHV NGGIEKSLER SMYLELALAA MDELVKMAQA DEPLWVRSME EGREILNQEQ 360 YVKTFTPCIG LRPNGFVSEA SRETGMVIIN SMALVETLMD SNKWAEMFPC LIARTSTTDV 420 IASGMGGTRN GALQLMHAEL QVLSPLVPVR EVNFLRFCKQ HAEGVWAVVD VSIDTIRETS 480 GAPVFPNSRR LPSGCVVQDM PNGYSKVTWV EHAEYEESVV HQLYRQMISA GMGFGAQRWV 540 ATLQRQCECL AILMSSTLPT RDHTAITPSG RRSMLKLAQR MTNNFCAGVC ASTVHKWNKL 600 CTGNVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPISP GRLFDFLRDE RLRSEWDILS 660 NGGPMQEMAH IAKGQDHGNC VSLLRASVIP LIHSPFDFLV KPGLKTNLDN SSNKREPEQH 720 ADPPGDMHRR GGVAGGVRPR GYSGNARGDE RWRFRVRCAS PFWLRHRTRR PSLSRAQRGE 780 RRGPGAPTRR RLALDGGVSD LGQQPPHGQV NGGIGGDGQQ PYILHRSKNQ GRPSLRELTG 840 PRDLHVEPIE KRVKNEPRKQ PFAPSHGVSP ATLQGGGSAG LDKRNPRGTW WFGY

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MNFGGFLDNS FAGGFGGGGG GAMPGGPVAH PCLVPQSLAK SMFNSPGLSL ALQTGMEGQG  60
EVARIGESFE ANNNGGHNGS GRRSREEEPE SRSGSDNLEG VSGDDQDAAD DKPPRKKRYH  120
RHTPQQIQEL EALFKECPHP DEKQRLELSK RLCLDIRQVK FWFQNRRTQM KTQLERHENS  180
ILRQENDKLR AENMAIREAL RNPICNNCGA PAMIGEISLE EQHLRIENVR LKDELDRVCA  240
LAGKFLGRPV SSLTTSMAPP LPNSSLELGV GSNGFGELSV VPTTTLPLAP PDFGVGISSA  300
LPVVQPTRHV NGGIEKSLER SMYLELALAA MDELVKMAQA DEPLWVRSME EGREILNQEQ  360
YVKTFTPCIG LRPNGFVSEA SRETGMVIIN SMALVETLMD SNKWAEMFPC LIARTSTTDV  420
IASGMGGTRN GALQLMHAEL QVLSPLVPVR EVNFLRFCKQ HAEGVWAVVD VSIDTIRETS  480
GAPVFPNSRR LPSGCVVQDM PNGYSKVTWV EHAEYEESVV HQLYRQMISA GMGFGAQRWV  540
ATLQRQCECL AILMSSTLPT RDHTAITPSG RRSMLKLAQR MTNNFCAGVC ASTVHKWNKL  600
CTGNVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPISP GRLFDFLRDE RLRSEWDILS  660
NGGPMQEMAH IAKGQDHGNC VSLLRASVIP LIHSPFDFLV KPGLKTNLDN SSNKREPEQH  720
ADPPGDMHRR GGVAGGVRPR GYSGNARGDE RWRFRVRCAS PFWLRHRTRR PSLSRAQRGE  780
RRGPGAPTRR RLALDGGVSD LGQQPPHGQV NGGIGGDGQQ PYILHRSKNQ GRPSLRELTG  840
PRDLHVEPIE KRVKNEPRKQ PFAPSHGVSP ATLQGGGSAG LDKRNPRGTW WFGY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019189515.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A3Q7EKE6	0.0	A0A3Q7EKE6_SOLLC; Uncharacterized protein
STRING	Solyc01g091630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]