PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000158.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 139aa    MW: 15422.5 Da    PI: 10.4675
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000158.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-182761135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             Cs C+tt TplWR gp g+k+LCnaCG++y kk++
  Itr_sc000158.1_g00002.1 27 CSDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 61
                             ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-132171IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-132161No hitNo description
PROSITE profilePS5011412.5982156IPR000679Zinc finger, GATA-type
CDDcd002024.61E-132679No hitNo description
Gene3DG3DSA:3.30.50.101.3E-152661IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
PfamPF003203.1E-162761IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDLNEQMRSE SEERNRSSKD NSPVKSCSDC HTTRTPLWRG GPAGPKSLCN ACGIKYNKKR  60
RQMLGLERGR NEKGKKRRKS GGGGDGGGSA ETAKSLRMRW MALEGETALR RSEKLLSQLR  120
EEEQAAILLM ALSYGSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15878KRRQMLGLERGRNEKGKKRRK
27478KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163663.11e-63PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ109e-31GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2G9G6U29e-52A0A2G9G6U2_9LAMI; Uncharacterized protein
STRINGMigut.D00108.1.p1e-50(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-27GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]