PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000157.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 177aa MW: 19925.4 Da PI: 7.1134

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000157.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.9e-19	15	69	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++ Le F+ n++++a+++ +LA++lgL+ rq+ +W+qN+Ra+ k Itr_sc000157.1_g00005.1 15 CHKKRLTQDQVRLLEGSFNVNNKLDADSKSQLANQLGLPPRQIAIWYQNKRARSK 69 567789***********************************************99 PP
2	HD-ZIP_I/II	108.3	5.4e-35	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +k+rl+++qv+lLE sF+ ++kL+ + K++la++Lgl prq+a+W+qn+RAR k++ lE+d++aL++++d++ ++nerL++eve+L Itr_sc000157.1_g00005.1 16 HKKRLTQDQVRLLEGSFNVNNKLDADSKSQLANQLGLPPRQIAIWYQNKRARSKSQSLEVDHKALHERLDEVLSDNERLRREVERL 101 69********************************************************************************** PP HD-ZIP_I/II 88 reelke 93 ree+++ Itr_sc000157.1_g00005.1 102 REEVQK 107 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.5E-15	14	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.1E-17	15	79	IPR009057	Homeodomain-like
Pfam	PF00046	7.2E-16	16	69	IPR001356	Homeobox domain
CDD	cd00086	3.17E-15	16	72	No hit	No description
PROSITE profile	PS50071	15.127	17	71	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.2E-18	18	76	IPR009057	Homeodomain-like
PRINTS	PR00031	2.8E-5	42	51	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.8E-5	51	67	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDNFQSLTRK PLFKCHKKRL TQDQVRLLEG SFNVNNKLDA DSKSQLANQL GLPPRQIAIW 60 YQNKRARSKS QSLEVDHKAL HERLDEVLSD NERLRREVER LREEVQKAQE MLQLATAAAT 120 PYSSLSLSCS SCDEAAGSLG LLHGSSKELY ACLLDDHESQ FGTSGDLHNF FAPPALS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162286.1	2e-96	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1U7YMN8	5e-67	A0A1U7YMN8_NICSY; homeobox-leucine zipper protein ATHB-52-like
STRING	XP_009800499.1	9e-68	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	9e-28	homeobox protein 52