PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000156.1_g00029.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 139aa MW: 15812.4 Da PI: 7.4697

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000156.1_g00029.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.5	1.7e-42	55	130	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqve+C++d+++ak yhrrhkvCe+h+kap+vl++g++qrfCqqCsrfhel +fDe+krsCrrrLa+hnerrr+ + Itr_sc000156.1_g00029.1 55 CQVEDCSTDMTDAKPYHRRHKVCEIHAKAPSVLINGVQQRFCQQCSRFHELAQFDEAKRSCRRRLAGHNERRRRIT 130 *************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	5.7E-56	1	139	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	4.8E-35	48	116	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.214	52	129	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.24E-39	53	133	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-33	55	128	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
METSKPEGKR SINETESAEG GEDEDEDVEE DNKKKRALTL SGRKLTGGGS TQLFCQVEDC 60 STDMTDAKPY HRRHKVCEIH AKAPSVLING VQQRFCQQCS RFHELAQFDE AKRSCRRRLA 120 GHNERRRRIT YDSHGEGST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-39	46	128	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00359	DAP	Transfer from AT3G15270	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170060.1	3e-83	PREDICTED: squamosa promoter-binding protein 1
Swissprot	Q38741	1e-60	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A484LZ20	4e-65	A0A484LZ20_9ASTE; Squamosa promoter-binding-like protein
TrEMBL	Q0PY35	3e-65	Q0PY35_SOLLC; Squamosa promoter-binding-like protein
STRING	Solyc02g077920.2.1	5e-66	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	7e-43	squamosa promoter binding protein-like 5

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]