PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000156.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LSD

Protein Properties

Length: 490aa MW: 54111 Da PI: 4.5802

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000156.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.3	2.3e-12	401	425	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lLsYPrG++ V+C+ C+tV Itr_sc000156.1_g00014.1 401 CGTCRQLLSYPRGSKWVQCSACQTV 425 ************************9 PP
2	zf-LSD1	45.7	1.1e-14	439	463	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsV+C++C++V Itr_sc000156.1_g00014.1 439 CGGCTVLLMYPYGAPSVKCSSCHFV 463 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.9E-14	398	427	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.5E-10	401	425	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.3E-11	436	465	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.4E-12	439	463	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MGAEEGMEIN PKTFVEEEED DDDEGPPPGF DSIAIRSQLE NMDVEDGGGE EDEDDVDDDD 60 DDDDDGPPPG FAELHRPATP PLSATNHSGL EDNWLYKLVA KAKVLLLFPE LGNMHYTQRL 120 RNQGLSDVEI GKEQNETKYE EDRPPLGWQS TSPKQPHQSM TSSELVSGWT VVVTATTWIV 180 VVATGWLEAL DDGQQRLSDA KACGLYTQMR SIEEDDDGPP PGWQWNPQQQ PLPESIPPPG 240 LQSAPSSNIQ MGITQEDDDG PPPGWQLISS QQKPPQTTPP LLPQSVAPSA LSKIWNWIGR 300 HCLVVWYGRE DVVSKENKGG NKWEIEWRQS GSESSPMQEH SSTPTRHSSV ASSDIEMATK 360 QQSIKNEHKK LCTDRGPTQR MVTRLPPAAL QISSEVGQLV CGTCRQLLSY PRGSKWVQCS 420 ACQTVNLALE GHQIGQVKCG GCTVLLMYPY GAPSVKCSSC HFVTRIGAHN RRPHLAAQQA 480 RRQRPSHQAH

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MGAEEGMEIN PKTFVEEEED DDDEGPPPGF DSIAIRSQLE NMDVEDGGGE EDEDDVDDDD  60
DDDDDGPPPG FAELHRPATP PLSATNHSGL EDNWLYKLVA KAKVLLLFPE LGNMHYTQRL  120
RNQGLSDVEI GKEQNETKYE EDRPPLGWQS TSPKQPHQSM TSSELVSGWT VVVTATTWIV  180
VVATGWLEAL DDGQQRLSDA KACGLYTQMR SIEEDDDGPP PGWQWNPQQQ PLPESIPPPG  240
LQSAPSSNIQ MGITQEDDDG PPPGWQLISS QQKPPQTTPP LLPQSVAPSA LSKIWNWIGR  300
HCLVVWYGRE DVVSKENKGG NKWEIEWRQS GSESSPMQEH SSTPTRHSSV ASSDIEMATK  360
QQSIKNEHKK LCTDRGPTQR MVTRLPPAAL QISSEVGQLV CGTCRQLLSY PRGSKWVQCS  420
ACQTVNLALE GHQIGQVKCG GCTVLLMYPY GAPSVKCSSC HFVTRIGAHN RRPHLAAQQA  480
RRQRPSHQAH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169279.1	0.0	PREDICTED: protein IWS1 homolog isoform X1
TrEMBL	A0A328DVG1	1e-121	A0A328DVG1_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-33	lsd one like 2