PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000155.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 433aa    MW: 47296.4 Da    PI: 7.5846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000155.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.9e-10111132426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              ++C+++++ G Ck+Gd+C+F H+
  Itr_sc000155.1_g00011.1 111 KICSYWLQ-GSCKFGDNCRFLHS 132
                              79******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.712348IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.5162349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7107132IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-7109133IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-8110132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-7111129IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.22E-45129186IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.8E-44130424IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.9E-6138177IPR001680WD40 repeat
PfamPF004009.1E-6140177IPR001680WD40 repeat
PROSITE profilePS5008213.917145186IPR001680WD40 repeat
PROSITE profilePS5029418.642145346IPR017986WD40-repeat-containing domain
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
PRINTSPR003207.9E-7164178IPR020472G-protein beta WD-40 repeat
SMARTSM00320190217253IPR001680WD40 repeat
SuperFamilySSF509785.22E-45224425IPR017986WD40-repeat-containing domain
SMARTSM003200.0012260297IPR001680WD40 repeat
PfamPF004008.3E-4264297IPR001680WD40 repeat
PROSITE profilePS5008212.113267306IPR001680WD40 repeat
PRINTSPR003207.9E-7284298IPR020472G-protein beta WD-40 repeat
SMARTSM003201.6E-4300337IPR001680WD40 repeat
PfamPF004001.6E-4302336IPR001680WD40 repeat
PRINTSPR003207.9E-7324338IPR020472G-protein beta WD-40 repeat
SMARTSM003202.1341384IPR001680WD40 repeat
SMARTSM003200.79387424IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDIDGSKRIF RRLGPSQGDN GSKQQQRVCF HWRAGRCDRF PCPFLHRELD APPPQTQGSL  60
TNGTASSKRS HGYSDDYRGG PRRNTNFNNN WGRNPAHGGG NSTRAVTKTE KICSYWLQGS  120
CKFGDNCRFL HSWITGNCFS LLTTLEGHQK VVSGIALPSG SDKLYSGSTD KTVRVWDCQS  180
GQCAGVVNVS GEVGCMLSEG PWIFVGITNL VKAWNAQTAA DLNLTGPVGQ VYSIVVGNDM  240
LFAGTEDGIL AWKFNVATNC FEPAASLKGH SHHVVSLVVG GNRLYSGSMD NTIRVWSLET  300
LQCLQILTGH TSVVMSVLCW DQFLLSCSLD KTVKVWVANE SGSLEVTYTH KEEHGVLALC  360
GMHDAEAKPV LLCSCNDNTV HVYDLPSFSE RGKIFSKEAI RCIEIGPGGL FFTGDESGQV  420
RVWKWLAETT TAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-221424238320Tako8
6g6n_A4e-221424238320Tako8
6g6n_B4e-221424238320Tako8
6g6n_C4e-221424238320Tako8
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8499750.0AB849975.1 Ipomoea nil DR14 mRNA for zinc finger CCCH domain-containing protein, complete cds, cultivar: Violet.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154899.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLX5I1990.0X5I199_IPONI; Zinc finger CCCH domain-containing protein
STRINGXP_009626305.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1