PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000149.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 314aa    MW: 34956.9 Da    PI: 5.3062
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000149.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.91.2e-36101101101
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCa+Ck++rr+C+ dC+lapyfpa+qp+ f+n+h+lFG+sn++k+lk++++++r  am+s++ +A+ara+ PvyG+v+ i++l  +
  Itr_sc000149.1_g00016.1  10 ACASCKYQRRRCKVDCPLAPYFPADQPNMFQNAHRLFGVSNIIKILKQIDPSQRGVAMKSIIDQANARAKYPVYGCVAEIQQLMIK 95 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkeel 101
                              ++ +++el++++++l
  Itr_sc000149.1_g00016.1  96 IQLAEEELQAVQAQL 110
                              **********99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.8319110IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3610107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTRKGGTSQA CASCKYQRRR CKVDCPLAPY FPADQPNMFQ NAHRLFGVSN IIKILKQIDP  60
SQRGVAMKSI IDQANARAKY PVYGCVAEIQ QLMIKIQLAE EELQAVQAQL AFYRQHNQQQ  120
QQQEISSTDS VLPLQLGTLP PPLPISPPTN GFTLFHQDPS PQYCNAAAPV TAFPVSHPSS  180
YSNATNAAYN TSNPTAYVNS KDNNNINSLW IQQHFANSNT NNNNNTSNPM MMQPQMGSAQ  240
PITIQQEEEN IQDYDEIHPF FDTIDDRQSY IDSKEAYESS SESSLKDIAQ SVEHVSENEL  300
KSAAACFSLT SVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2661137114LOB family transfactor Ramosa2.1
5ly0_B6e-2661137114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197230.10.0PREDICTED: LOB domain-containing protein 27
TrEMBLA0A1S4B0911e-130A0A1S4B091_TOBAC; LOB domain-containing protein 27-like
STRINGXP_009588931.11e-131(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.18e-48LOB domain-containing protein 27