PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000148.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 263aa MW: 29825.5 Da PI: 9.0984

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000148.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.5	2.8e-32	92	144	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +rY+eClkNhAas+Ggh++DGCgEfmps geegt++alkCaAC+CHRnFHR+ Itr_sc000148.1_g00022.1 92 IRYRECLKNHAASTGGHVTDGCGEFMPS-GEEGTPEALKCAACNCHRNFHRKGI 144 79***********************9.999*****************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-21	92	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.3E-30	92	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-30	93	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.592	94	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.56E-19	189	260	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-30	191	261	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.697	197	261	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	2.3E-27	199	256	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MESRSKEKFE GIPRSMAFSP HPPSRINLQA QEPSSQQTLD QMGEKELEHH HMHEGPSNPD 60 PDPSLLNNKP TTQQVLPQRF ADTDTSDTTT LIRYRECLKN HAASTGGHVT DGCGEFMPSG 120 EEGTPEALKC AACNCHRNFH RKGIRHGRST FHTQNPPMPP QQQHFRGAMP PPIRAPAESS 180 SEDLNAGGGQ GLMQVPSSKK RFRTKFTQQQ KQQMHEFAEK IGWRIQKQDD QEVHKFCSEV 240 GVKRQVFKVW MHNSKQAEKK KQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-22	198	257	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182448.1	1e-135	PREDICTED: zinc-finger homeodomain protein 2
Refseq	XP_019182449.1	1e-135	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	Q9ZPW7	1e-59	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A1S3YGM0	3e-82	A0A1S3YGM0_TOBAC; zinc-finger homeodomain protein 6-like
STRING	XP_009603276.1	4e-83	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	1e-51	homeobox protein 24