PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000145.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 158aa MW: 17443.9 Da PI: 9.5885 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.4 | 6.4e-07 | 9 | 31 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++k+ L H++ H Itr_sc000145.1_g00009.1 9 FVCKYCDKKFRNKYALGGHQNAH 31 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.55E-6 | 8 | 36 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 9 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.344 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MAAEAGLDFV CKYCDKKFRN KYALGGHQNA HRFERAMDWT LKRNRRGGFM DYYPPFSPFA 60 GFPVLSGAGA GGYWNQAAAY FRAGYRIPSP EILVRPLPVE YRPRPQVLPP AMNISGGNTF 120 PVGSGSVNSA VTPIAINSNP RNAPEMMEDG ELDLNLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019186455.1 | 6e-42 | PREDICTED: uncharacterized protein LOC109181155 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13342 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 3e-10 | zinc finger protein 2 |