PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000144.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 322aa MW: 35873.8 Da PI: 4.5705

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000144.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.9e-19	67	118	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +q+++Le++F ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Itr_sc000144.1_g00012.1 67 RRLGVHQVKALEKYFDLENKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 118 467789*********************************************9 PP
2	HD-ZIP_I/II	126.2	1.5e-40	64	156	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 ekkrrl +qvk+LE+ F+ e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk++yd+lk++ e+L++++++ Itr_sc000144.1_g00012.1 64 EKKRRLGVHQVKALEKYFDLENKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKANYDSLKRSYETLQHDNQD 149 69********************************************************************************** PP HD-ZIP_I/II 87 Lreelke 93 L ++++e Itr_sc000144.1_g00012.1 150 LLKQIRE 156 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.76E-19	52	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	60	120	IPR001356	Homeobox domain
SMART	SM00389	2.2E-18	63	124	IPR001356	Homeobox domain
CDD	cd00086	6.07E-16	65	121	No hit	No description
Pfam	PF00046	3.8E-16	66	118	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-19	71	127	IPR009057	Homeodomain-like
PRINTS	PR00031	8.2E-6	91	100	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.2E-6	100	116	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.0E-18	120	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MKRSSLGGSD SLGKTTSLLL LLFLYTITIY SPCTLNVYGR EFRSMMEGVD EEESAGGGCG 60 GMGEKKRRLG VHQVKALEKY FDLENKLEPE RKVKLAQELG LQPRQVAIWF QNRRARWKTK 120 QLERDYGVLK ANYDSLKRSY ETLQHDNQDL LKQIRELKGK MNGEDGERKV TVKEEAVESF 180 SGGGKSKPTA GDNETELNFD DNHFHGGGVA GNASIFAEFK DWSSDSDSSA IMNEDNSPNA 240 AMSSSGAAAA AAFFTASDNP AQFSEIPKNI LGDSYDDTQF VKIEEHNFFA AGEEPCTILL 300 SEEQAPTFPW ICPDDWNWED ES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARWKTKQ
2	133	138	DSLKRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182987.1	1e-158	PREDICTED: homeobox-leucine zipper protein ATHB-16-like
TrEMBL	A0A484L1E7	1e-101	A0A484L1E7_9ASTE; Uncharacterized protein
STRING	XP_009588928.1	4e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2718	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	9e-56	homeobox protein 16