PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000144.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28187.8 Da PI: 7.8039 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 56 | 102 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ K +Ka+ L +Av+++++L Itr_sc000144.1_g00004.1 56 KSHSEAERRRRKRINGHLATLRTLLPNT-----IKTDKASLLAEAVKCVREL 102 69*************************8.....6**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.415 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.81E-11 | 56 | 104 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.4E-14 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-11 | 56 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-13 | 57 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-12 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 1.24E-5 | 166 | 240 | No hit | No description |
CDD | cd04873 | 2.14E-4 | 166 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 8.9E-7 | 166 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MQTFPSFYEV GSCSESYNNF LQGIMGSSEM MMNSLEDTSC VSPRSLAEAK AIAANKSHSE 60 AERRRRKRIN GHLATLRTLL PNTIKTDKAS LLAEAVKCVR ELKKTTTELA AAPESDTDDD 120 SSFSYATAGG GGEVRRTKYM FPSETDELKL SYAAGEEGGG NLKAALCCED RPEIITEVVR 180 ALKSVEGKVV RAEMATVGGR IKCVLWVHVE GLNNGGGGSG GEEVVAAVRR ALKVVVDRSN 240 AVVNSSQSDL TGHKRPRLYQ Y |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019182843.1 | 1e-162 | PREDICTED: transcription factor bHLH30-like | ||||
Refseq | XP_019182844.1 | 1e-162 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A1S3ZYB9 | 1e-105 | A0A1S3ZYB9_TOBAC; transcription factor bHLH30-like | ||||
STRING | XP_009605433.1 | 1e-105 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7283 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-36 | bHLH family protein |