PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000141.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 280aa    MW: 31625.6 Da    PI: 4.5689
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000141.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.7e-2165118356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k++++++eq++ Le+ Fe+++++  e++ +LA+klgL+ rqV vWFqNrRa++k
  Itr_sc000141.1_g00019.1  65 KKRRLSPEQVHLLEKSFEEENKLEPERKSQLAHKLGLQPRQVAVWFQNRRARWK 118
                              56789************************************************9 PP
2HD-ZIP_I/II132.91.2e-4264156193
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrls eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++y++l ++ +++ ke+e+
  Itr_sc000141.1_g00019.1  64 EKKRRLSPEQVHLLEKSFEEENKLEPERKSQLAHKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYESLLSDYDSILKEKEK 149
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelke 93 
                              L++el++
  Itr_sc000141.1_g00019.1 150 LKSELAS 156
                              **99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-2053122IPR009057Homeodomain-like
PROSITE profilePS5007118.33460120IPR001356Homeobox domain
SMARTSM003893.1E-2063124IPR001356Homeobox domain
CDDcd000861.03E-1965121No hitNo description
PfamPF000465.0E-1865118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-2266127IPR009057Homeodomain-like
PRINTSPR000316.9E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000316.9E-6100116IPR000047Helix-turn-helix motif
PfamPF021833.2E-16120161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MESGRIFFDP ACHANMLFLG HADPIFRGGR SVVKLEETSK RSRPFFTSPE DLFDEEYYDE  60
QSPEKKRRLS PEQVHLLEKS FEEENKLEPE RKSQLAHKLG LQPRQVAVWF QNRRARWKTK  120
QLERDYDQLK SSYESLLSDY DSILKEKEKL KSELASLNEK LEAKEVVSHK AASGDPVVPG  180
DAAAAVGANV KVEDRLSSGS AGSAVVDQDS PQLVDSGDSY FHNHHNYHEC GEGLQALQSG  240
EEDDGSDDGQ NNYFSAMFVG AEQPQHDDDD DGEPLGWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183510.11e-172PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022835e-89HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1R3IDV01e-121A0A1R3IDV0_COCAP; Uncharacterized protein
STRINGMigut.H00128.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-68homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]