PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000139.1_g00046.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 506aa MW: 52707 Da PI: 7.4842

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000139.1_g00046.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.8	6.5e-41	122	228	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s+ Itr_sc000139.1_g00046.1 122 LAKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSA 207 579*****************************************************************999777777777774444 PP TCP 88 gkaaksaakskksqksaasalnlakesr 115 + +sk++++s +++l+la+ ++ Itr_sc000139.1_g00046.1 208 P-------PSKSAPHSFHNTLALAAAHH 228 4.......44444444444444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-38	126	220	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.542	127	181	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MEPSNTQSNN KPNSTTASQP FNHQHGGARS APFISSISIH APAAGRVLGG GNNTSGTTGS 60 GSGSSSISPS SSSTSASTAS AAAPAEPPRL VDASLAIATR SEALLDPSKK PQPAAAAAAQ 120 QLAKRSTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA 180 ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHNT LALAAAHHPP AHPFEEGFSH 240 MLGFHQTPHF LTPNQIADTI SGGGDDGGGG GGRGQETTEN YLGKRYREDL FKDEGSSNPQ 300 GESPGAGAGN SDSPSNKQFK PASMNLPKPI QETTAGPSST MFRHTNMMPA AAMWAVASGG 360 TAGAAAGTFS MLPVSPVAST SGSEPGQMWA FQTSTGNTLQ APLHFMSRFN LPGNLDFPAS 420 RATPLQLGSM IMQQQQQQHQ QQPSQQLGLG MPDGNLGMLA AFNAYPRTGL NMNSDHHQTG 480 RHPLEHHQQH HQTPDDSADD DPNTSQ

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MEPSNTQSNN KPNSTTASQP FNHQHGGARS APFISSISIH APAAGRVLGG GNNTSGTTGS  60
GSGSSSISPS SSSTSASTAS AAAPAEPPRL VDASLAIATR SEALLDPSKK PQPAAAAAAQ  120
QLAKRSTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA  180
ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHNT LALAAAHHPP AHPFEEGFSH  240
MLGFHQTPHF LTPNQIADTI SGGGDDGGGG GGRGQETTEN YLGKRYREDL FKDEGSSNPQ  300
GESPGAGAGN SDSPSNKQFK PASMNLPKPI QETTAGPSST MFRHTNMMPA AAMWAVASGG  360
TAGAAAGTFS MLPVSPVAST SGSEPGQMWA FQTSTGNTLQ APLHFMSRFN LPGNLDFPAS  420
RATPLQLGSM IMQQQQQQHQ QQPSQQLGLG MPDGNLGMLA AFNAYPRTGL NMNSDHHQTG  480
RHPLEHHQQH HQTPDDSADD DPNTSQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171780.1	0.0	PREDICTED: transcription factor TCP8-like isoform X1
Refseq	XP_019171781.1	0.0	PREDICTED: transcription factor TCP8-like isoform X1
TrEMBL	A0A1U7XY29	1e-168	A0A1U7XY29_NICSY; transcription factor TCP8-like
STRING	XP_009795828.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-65	TCP family protein