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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000139.1_g00046.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 506aa MW: 52707 Da PI: 7.4842 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.8 | 6.5e-41 | 122 | 228 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s+ Itr_sc000139.1_g00046.1 122 LAKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSA 207 579*****************************************************************999777777777774444 PP TCP 88 gkaaksaakskksqksaasalnlakesr 115 + +sk++++s +++l+la+ ++ Itr_sc000139.1_g00046.1 208 P-------PSKSAPHSFHNTLALAAAHH 228 4.......44444444444444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-38 | 126 | 220 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.542 | 127 | 181 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MEPSNTQSNN KPNSTTASQP FNHQHGGARS APFISSISIH APAAGRVLGG GNNTSGTTGS 60 GSGSSSISPS SSSTSASTAS AAAPAEPPRL VDASLAIATR SEALLDPSKK PQPAAAAAAQ 120 QLAKRSTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA 180 ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHNT LALAAAHHPP AHPFEEGFSH 240 MLGFHQTPHF LTPNQIADTI SGGGDDGGGG GGRGQETTEN YLGKRYREDL FKDEGSSNPQ 300 GESPGAGAGN SDSPSNKQFK PASMNLPKPI QETTAGPSST MFRHTNMMPA AAMWAVASGG 360 TAGAAAGTFS MLPVSPVAST SGSEPGQMWA FQTSTGNTLQ APLHFMSRFN LPGNLDFPAS 420 RATPLQLGSM IMQQQQQQHQ QQPSQQLGLG MPDGNLGMLA AFNAYPRTGL NMNSDHHQTG 480 RHPLEHHQQH HQTPDDSADD DPNTSQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171780.1 | 0.0 | PREDICTED: transcription factor TCP8-like isoform X1 | ||||
Refseq | XP_019171781.1 | 0.0 | PREDICTED: transcription factor TCP8-like isoform X1 | ||||
TrEMBL | A0A1U7XY29 | 1e-168 | A0A1U7XY29_NICSY; transcription factor TCP8-like | ||||
STRING | XP_009795828.1 | 1e-169 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11484 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 2e-65 | TCP family protein |