PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000139.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 493aa MW: 54158.4 Da PI: 7.3805

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000139.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	60.1	4.3e-19	242	282	1	40
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkver 40 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+ + Itr_sc000139.1_g00007.1 242 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQTRT 282 58*************************99****9754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-25	227	322	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-20	235	322	IPR003657	WRKY domain
PROSITE profile	PS50811	22.768	237	322	IPR003657	WRKY domain
SMART	SM00774	1.0E-27	242	321	IPR003657	WRKY domain
Pfam	PF03106	9.7E-23	243	320	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MMNTCSNNSE SPHDHMDIDL SLKLNESPQD SPQAVGESSP LPNKGDSPSS SKNSKTEEFI 60 RWDDPHHYED RAQYGLLLQT EMKRMKEENK VLREAVEHTM KDFLDLQAKL ALFVQQNDHK 120 KDVISNFVWV NGEEGKISQE LNRTSSSLSP TAQLEHDNNN NSISDTELGL SLTLQTAAAA 180 DDDHEKGRDQ KSPPSRPPSI HGNIHHGNSF AAGLSAKNPP ISQHNVRKPR VSVRARCESA 240 TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQT RTHDLPSKGG HYMPIEHKVQ 300 RCIEDMSILI TTYEGTHNHP LPVGATAMAA STASTAASFM FLDSSNPISN NNLGIPQNQP 360 FLNSQNYHHN MIPTLIRNIN PNSAMAAPYH HDPAASSKLG LVLDLTKDNN GVSSSASSST 420 SLPKLQGQMG QYSSWMMQRL AGNFDGHLQS GNTAENDKQK LVENVSAIAA DPKFRVAVAA 480 AISSFINKDK PPS

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MMNTCSNNSE SPHDHMDIDL SLKLNESPQD SPQAVGESSP LPNKGDSPSS SKNSKTEEFI  60
RWDDPHHYED RAQYGLLLQT EMKRMKEENK VLREAVEHTM KDFLDLQAKL ALFVQQNDHK  120
KDVISNFVWV NGEEGKISQE LNRTSSSLSP TAQLEHDNNN NSISDTELGL SLTLQTAAAA  180
DDDHEKGRDQ KSPPSRPPSI HGNIHHGNSF AAGLSAKNPP ISQHNVRKPR VSVRARCESA  240
TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQT RTHDLPSKGG HYMPIEHKVQ  300
RCIEDMSILI TTYEGTHNHP LPVGATAMAA STASTAASFM FLDSSNPISN NNLGIPQNQP  360
FLNSQNYHHN MIPTLIRNIN PNSAMAAPYH HDPAASSKLG LVLDLTKDNN GVSSSASSST  420
SLPKLQGQMG QYSSWMMQRL AGNFDGHLQS GNTAENDKQK LVENVSAIAA DPKFRVAVAA  480
AISSFINKDK PPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-17	230	324	2	76	WRKY transcription factor 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171590.1	0.0	PREDICTED: probable WRKY transcription factor 9
TrEMBL	A0A1Q3BH77	1e-104	A0A1Q3BH77_CEPFO; WRKY domain-containing protein
STRING	PGSC0003DMT400076591	4e-91	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7287	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	5e-60	WRKY DNA-binding protein 9